Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G04f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   2.2  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   2.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   3.8  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 135 GSRSINHQDFYYLPFFKIYC*NLRTIIIFITPNNYSANSSCRI 7
           G  S+       LP FK+     R + I +T  NYS   +C I
Sbjct: 202 GPNSVGVSSEVSLPQFKVLGHRRRAVEISLTTGNYS-RLACEI 243


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 135 GSRSINHQDFYYLPFFKIYC*NLRTIIIFITPNNYSANSSCRI 7
           G  S+   +   LP FK+     R + I +T  NYS   +C I
Sbjct: 20  GPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYS-RLACEI 61


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 156 WVCPCDGGSRSINHQDFYYLP 94
           W+C     + S   ++FYYLP
Sbjct: 49  WICALVNYNVSEISENFYYLP 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,378
Number of Sequences: 336
Number of extensions: 2464
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)