Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   171   5e-44
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    29   0.32 
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    29   0.56 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   0.73 
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    27   1.7  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    27   1.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.7  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.0  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   3.9  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   5.2  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   5.2  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   6.8  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  171 bits (416), Expect = 5e-44
 Identities = 78/141 (55%), Positives = 104/141 (73%)
 Frame = +3

Query: 99  DNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRR 278
           D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++KGKRR
Sbjct: 25  DTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRR 84

Query: 279 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 458
           K+TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +LP+ D+VE
Sbjct: 85  KDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVE 144

Query: 459 GLTGNLFEVYLKPYFMEAYRP 521
           GLTG+LF+VYLKPYF+EAYRP
Sbjct: 145 GLTGSLFDVYLKPYFVEAYRP 165


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 82  NFEKWQIIKVLMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNFNSSVVTQ 255
           N +KW++   +    P  S + + PT+S   + + SA TT     +RP  S   S  +  
Sbjct: 290 NIKKWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKNRSPPINF 349

Query: 256 SCSKANAARKPFASCS 303
             +  +AA   F+  S
Sbjct: 350 DGTSYDAAGNVFSPSS 365


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 108 SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 281
           S +D+S  + RR     R + + A S D++  V A S       +L  G+T+       K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302

Query: 282 ETVCIVLSD 308
             VC+ L+D
Sbjct: 303 AAVCVALND 311


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 112 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 225
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 456 QLNHQLAVCGLV---FHISLKDTELWI 385
           QLN ++  CG++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 456 QLNHQLAVCGLV---FHISLKDTELWI 385
           QLN ++  CG++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 66  LDSN-NKF*KMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 242
           L SN NKF        P +  T   +RK + N  ++ +A ++ N+  +++ A  E+ QL+
Sbjct: 760 LKSNTNKFLGSLAGNLPQESLTTKSKRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 133 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANA 276
           SSV       S S   ++M++ + +F+    S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 426 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 316
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 163 RRLGLSLRRRIAVDKSSGLLLSAIFQNLLLESKNYYNFYNAK 38
           ++LG + + +IA  KSS  LL+ I ++L  E KN  N  + K
Sbjct: 150 KKLGSTSQHQIATPKSSASLLN-ILRSLHDEQKNTLNISSVK 190


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 111 PD-DLSTAILRRKDRPNRLIVEEAVSD 188
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 171 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 284
           E+AV D+N+ ++L+  +  +    RGD  ++ G   ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 165 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 293
           + +E  SD++ ++A++     EQ+   R    D  LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/89 (21%), Positives = 38/89 (42%)
 Frame = +3

Query: 72  SNNKF*KMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGD 251
           S+ +  K  D     D++   +   DRP    + + V D   ++A  + K+E+ +  +  
Sbjct: 610 SSQEILKACDIFRDYDMAALGVSFNDRPQGSALVKLV-DAEELIAAREQKLEEERAKQAK 668

Query: 252 TVLLKGKRRKETVCIVLSDDNCPDEKIRM 338
               K ++ K+ V  V+     P E  +M
Sbjct: 669 KAQAKAEQEKKQVERVMKGKTSPSEMFKM 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,641
Number of Sequences: 5004
Number of extensions: 42709
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)