Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283...   197   5e-51
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986...   196   1e-50
08_02_0657 - 19749835-19751942,19753123-19753561                      146   1e-35
06_01_0057 - 483710-484309                                             28   5.2  

>03_01_0364 -
           2834446-2834742,2834838-2835197,2835281-2835562,
           2835634-2835705,2835798-2836019,2836105-2836871,
           2837206-2837434,2838027-2838189,2838313-2838350
          Length = 809

 Score =  197 bits (480), Expect = 5e-51
 Identities = 90/142 (63%), Positives = 108/142 (76%)
 Frame = +3

Query: 96  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 275
           +D K   D STAIL RK  PNRL+V+EA +DDNSV+ +    ME+LQLFRGDTVLLKGK+
Sbjct: 11  SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70

Query: 276 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 455
           RK+T+CIVL+DD C + KIRM             DVVS+  CP VKYGKRVHILPIDD+V
Sbjct: 71  RKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTV 130

Query: 456 EGLTGNLFEVYLKPYFMEAYRP 521
           EG+TGNLF+ +LKPYF+EAYRP
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRP 152


>10_08_0170 +
           15397381-15397418,15397519-15397681,15398419-15398647,
           15398777-15399543,15399650-15399871,15399961-15400032,
           15400100-15400408,15400491-15400850,15401199-15401492
          Length = 817

 Score =  196 bits (477), Expect = 1e-50
 Identities = 92/142 (64%), Positives = 108/142 (76%)
 Frame = +3

Query: 96  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 275
           AD K   D STAIL RK  PNRL+V+EA +DDNSVVAL    ME+LQLFRGDTVLLKGK+
Sbjct: 11  ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70

Query: 276 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 455
           RK+T+CIVL+D+ C + KIRM             DVVS+  C  VKYGKRVHILPIDD+V
Sbjct: 71  RKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTV 130

Query: 456 EGLTGNLFEVYLKPYFMEAYRP 521
           EG+TGNLF+ +LKPYF+EAYRP
Sbjct: 131 EGITGNLFDAFLKPYFLEAYRP 152


>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score =  146 bits (353), Expect = 1e-35
 Identities = 69/140 (49%), Positives = 96/140 (68%), Gaps = 5/140 (3%)
 Frame = +3

Query: 117 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 281
           D STAIL   +K  PNRL+ ++A   V+ DNS V LS+A ME+L +FRGD V L+G+RR+
Sbjct: 16  DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75

Query: 282 ETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEG 461
           E VC    D++CPD ++R+             D+V++ PCP+++  KRV + P DDSVEG
Sbjct: 76  EAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPFDDSVEG 135

Query: 462 LTGNLFEVYLKPYFMEAYRP 521
           ++G+LFE YLKPYFM+A RP
Sbjct: 136 ISGDLFEPYLKPYFMDALRP 155


>06_01_0057 - 483710-484309
          Length = 199

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 121 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSK 267
           Y P    ART P  ++   + A    S W F    WS+  S V+T+  S+
Sbjct: 62  YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,127,625
Number of Sequences: 37544
Number of extensions: 277509
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)