Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.47 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 24/105 (22%), Positives = 39/105 (37%)
 Frame = -1

Query: 443 NWQYVDSFSIFH*RTRSYGYHIRKTHTKVVSHDTVHPNFLIRAIII*EHDANGFLAAFAF 264
           +WQ  D  S+        G  + +  ++++     H    + A I+    ++  L     
Sbjct: 240 HWQ--DQMSLPQMLADKIGKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICVTT 297

Query: 263 EQDCVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATEDR 129
              CV+ E L +    L  CH  VV   C  +       L TEDR
Sbjct: 298 GTKCVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDR 342


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 135 GSRSINHQDFYYLPFFKIYC*NLRTIIIFITPNNYSANSSCRI 7
           G  S+   +   LP FK+     R + I +T  NYS   +C I
Sbjct: 173 GPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYS-RLACEI 214


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 135 GSRSINHQDFYYLPFFKIYC*NLRTIIIFITPNNYSANSSCRI 7
           G  S+   +   LP FK+     R + I +T  NYS   +C I
Sbjct: 112 GPNSVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYS-RLACEI 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,177
Number of Sequences: 438
Number of extensions: 2663
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)