Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   201   2e-52
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   198   1e-51
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   184   4e-47
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   0.62 
At1g30750.1 68414.m03758 expressed protein                             29   1.9  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    29   2.5  
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    27   7.7  
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr...    27   7.7  

>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  201 bits (491), Expect = 2e-52
 Identities = 90/142 (63%), Positives = 112/142 (78%)
 Frame = +3

Query: 96  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 275
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67

Query: 276 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 455
           RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHILP+DD+V
Sbjct: 68  RKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTV 127

Query: 456 EGLTGNLFEVYLKPYFMEAYRP 521
           EG+TGNLF+ YLKPYF+EAYRP
Sbjct: 128 EGVTGNLFDAYLKPYFLEAYRP 149


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  198 bits (484), Expect = 1e-51
 Identities = 88/142 (61%), Positives = 111/142 (78%)
 Frame = +3

Query: 96  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 275
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67

Query: 276 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 455
           RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHILP+DD+V
Sbjct: 68  RKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTV 127

Query: 456 EGLTGNLFEVYLKPYFMEAYRP 521
           EG+TGNLF+ YLKPYF+EAYRP
Sbjct: 128 EGVTGNLFDAYLKPYFLEAYRP 149


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  184 bits (447), Expect = 4e-47
 Identities = 82/143 (57%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
 Frame = +3

Query: 96  ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 272
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67

Query: 273 RRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDS 452
           +RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYG RVHILP+DD+
Sbjct: 68  KRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDT 127

Query: 453 VEGLTGNLFEVYLKPYFMEAYRP 521
           +EG++GN+F+ YLKPYF+EAYRP
Sbjct: 128 IEGVSGNIFDAYLKPYFLEAYRP 150


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -1

Query: 248 TTEELKLLHFGL*KCHD*VVIAD 180
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = +1

Query: 133 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANAARKPFAS 297
           SS    +P +      S++      F++P  + FN  + + S S ++A  +PF +
Sbjct: 115 SSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQNQPFTN 169


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 82  NFEKWQIIKVLMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 234
           +  ++ +I +L  Y   R ++ R  P   L+  +SA T +++   +P W NF
Sbjct: 92  SMRRFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 404 RTRSYGYHIRKTHTKVVSHDTVHPNFLIRAII 309
           RT S    +++ HTK++ H+  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 421

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 380 IRKTHTKVVSHDTVHPNFLIRAIII*EHDANGF 282
           ++K   K+  H+T   +FLIR  ++ EH  +GF
Sbjct: 355 VKKNEVKIEVHETGERDFLIR--VVQEHKQDGF 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,421,373
Number of Sequences: 28952
Number of extensions: 225302
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)