Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    33   0.034
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    28   0.73 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   1.7  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    27   2.2  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   3.9  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    25   6.8  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   9.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   9.0  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   9.0  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   9.0  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 32.7 bits (71), Expect = 0.034
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = +3

Query: 252 RSPCCNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPAS 407
           +  CC+S   S  C+     CCS    TSCC      CC +    CCSN  S
Sbjct: 244 KKSCCSSKKPS-CCSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKS 293



 Score = 28.7 bits (61), Expect = 0.56
 Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
 Frame = +3

Query: 270 SICCSY--SCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCS-NPASGSLHSPCSCCI 440
           S CCS   S       CCS     SCC S    CC      CCS    S       SCC 
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQE-KKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281

Query: 441 CCRLPIWSSTSST 479
             +    S+  ST
Sbjct: 282 SEKPSCCSNGKST 294



 Score = 28.3 bits (60), Expect = 0.73
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
 Frame = +3

Query: 255 SPCCNSICCSYS-----CTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLH 419
           S CC+    S S     C+     CCS++   SCC      CC      CCS        
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSK-KPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281

Query: 420 S-PCSCC 437
           S   SCC
Sbjct: 282 SEKPSCC 288


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 21/66 (31%), Positives = 26/66 (39%)
 Frame = +3

Query: 279 CSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCRLPI 458
           C    TL  T   S+ C T+ CP  G L C   L W      +G L +  S         
Sbjct: 79  CYCGSTLTATEVSSSLC-TTPCPGYGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTS 137

Query: 459 WSSTSS 476
            SS+SS
Sbjct: 138 SSSSSS 143



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = +3

Query: 219 SFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSN 398
           S  S+T   S  SP  +S   + S +   +   S+   +S   SS      +      S+
Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190

Query: 399 PASGSLHSPCSCCICCRLPIWSSTSST 479
            +S S  S  S      +PI SSTSS+
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSS 217


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
 Frame = -3

Query: 213  CPAG--DINLCSVWRNVLRYSLSVSHVGWSNQRSS-----GYCWNSC 94
            C AG  D++ C+ W     Y        + NQ +S      YCWN C
Sbjct: 1237 CSAGVTDMSECNTWSYQKSYDYITGCNNYDNQGNSQTDASDYCWNVC 1283


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 378 LCWCCSNPASGSLHSPCSCCICCRLPI 458
           LC C S P+ G  H P      C LPI
Sbjct: 297 LCACHSIPSRGGFHCPRCKAKVCTLPI 323


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 300 RCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCR 449
           +C  C  +    SC P   I C F IL       A G+  +   C +C R
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCIL------SALGTTAATQKCPVCRR 248


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 291 SYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCSVWRN 172
           +YRS +W+        E  CC     C + +I +C V RN
Sbjct: 52  TYRS-RWAYVNDPQIGEINCCLNGWLCESNNILVCDVCRN 90


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +3

Query: 252 RSPCCNSICCSYSCTLRCTFCC---SNRCGTS 338
           RS  C     S +C  +CTFC    +N  GTS
Sbjct: 344 RSHLCMEATPSLACANKCTFCWRHGTNPVGTS 375


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 246 SCRSPCCNSICC 281
           +CR+PCC+ + C
Sbjct: 292 ACRTPCCDKLFC 303


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -2

Query: 484  GNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLG 344
            G   ++ DH    + +Q+   E +  +    Q+  +M+ + R PL+G
Sbjct: 965  GTCTDIHDHKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRTPLIG 1011


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 451 SRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQE 335
           S QHMQQ+Q + ++     +Q Q    +Q +     QQ+
Sbjct: 252 SLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQK 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,073
Number of Sequences: 5004
Number of extensions: 28735
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)