Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 35 0.046
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 33 0.18
02_04_0413 + 22681957-22682035,22682253-22682788 31 0.42
07_03_0072 - 13051145-13052362 31 0.74
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 0.98
01_01_0552 - 4065623-4065698,4066133-4066218 30 0.98
04_04_1591 + 34647817-34648416 29 1.7
01_06_0802 + 32087661-32087965,32088106-32088220,32088302-320884... 29 1.7
05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448 29 3.0
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 29 3.0
12_01_0030 + 262452-263210,263332-263575,263867-264165 28 4.0
11_04_0242 - 15273774-15274043,15274131-15274235 28 4.0
08_01_0436 + 3842143-3842850,3843140-3843314,3843829-3843911 28 4.0
02_02_0341 + 9141556-9142654,9143357-9143454 28 4.0
01_07_0360 + 43056226-43057566 28 4.0
10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244... 28 5.2
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 28 5.2
07_03_0953 + 22860954-22861262 28 5.2
06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507 28 5.2
04_04_1538 + 34239913-34241274,34241468-34241578 28 5.2
08_02_0773 + 21043553-21043813,21044775-21045203 27 6.9
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 27 6.9
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 27 9.1
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 27 9.1
02_03_0221 - 16554910-16555560 27 9.1
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 34.7 bits (76), Expect = 0.046
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Frame = +3
Query: 252 RSPCCNSI--C--CSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLH 419
R+PCCN + C C T+ C C + + C + G+ C C C
Sbjct: 28 RAPCCNDVFHCRHCHNESTVICLVCDTEQPVAQVCYNCGV-CMGEYFCSACK---FFDDD 83
Query: 420 SPCSCCICCRLPIW-SSTSSTFPYGFAPAFC 509
C CC+ C IW + +ST + C
Sbjct: 84 VRCRCCLLCFCWIWLTGNTSTAKIAASAGSC 114
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 216 ESFDSSTGLRSCRSPCCNSICCSYSCTL---RCTFCCSNRCGTSCCPSSGILCCFAILCW 386
E FD + G S + CC +C +C+ RC CG C L CF
Sbjct: 741 EMFDKAVGCCSRLTDCCCCMCFINTCSKMNDRCAIVMVQLCGALSC-----LACFECCSL 795
Query: 387 CC 392
CC
Sbjct: 796 CC 797
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = +3
Query: 255 SPCCNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCS- 431
SPC + CC + C C CG CP S P+ + H PC
Sbjct: 100 SPCVHPPCCESAAGCCCNGCSGGGCGGGQCPPS---------------PSCENHHPPCKP 144
Query: 432 -CCIC 443
CC C
Sbjct: 145 GCCCC 149
>07_03_0072 - 13051145-13052362
Length = 405
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 312 KRCSVGCSYRSSKWSCNRGYGRSEGR 235
+ C G R S W C RGY RS+ R
Sbjct: 206 RACLAGTRPRCSAWQCRRGYWRSQRR 231
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 CCNSICCSYSCTLRCTFCCSNRCGT-SCCPSSGILCC 368
C ++ C T C F N C CCP G CC
Sbjct: 386 CDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCC 422
>01_01_0552 - 4065623-4065698,4066133-4066218
Length = 53
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 279 CSYSC--TLRCTFCCSNRCGTSCCPSSGILCC 368
C Y+C TL C FCC C CC LCC
Sbjct: 25 CLYACLFTLCCCFCCYETC--ECCLE--CLCC 52
>04_04_1591 + 34647817-34648416
Length = 199
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 273 ICCSYSCTLRCTFCCSNRCGTSCCPSSG 356
+ C +CT+ CS +C SC P+ G
Sbjct: 172 LMCGKTCTMSAHTKCSAKCSKSCIPTCG 199
>01_06_0802 +
32087661-32087965,32088106-32088220,32088302-32088421,
32089678-32089788,32090084-32090122,32090965-32091069,
32091149-32091187,32091923-32092015
Length = 308
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 396 NPASGSLHSPCSCCICC--RLPIWSSTSSTFPYGFAPA 503
NP LH+P S RLP+W ST S P A A
Sbjct: 32 NPPHRFLHAPSSPAAASPSRLPLWRSTGSLLPVSAAAA 69
>05_04_0410 + 21053952-21054014,21054127-21054160,21054267-21054448
Length = 92
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 306 CSVGCSYRSSKWSCNRGYGRSEGRCCYQRTQC----PAGDINLCSVWRNVLRYS 157
C C YR SK + R+ G CC QR C +G+ N+C + N+ ++
Sbjct: 34 CGAKCGYRCSKSGRPKMCLRACGTCC-QRCGCVPPGTSGNENVCPCYANMTTHN 86
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 CCNSICCSYSCTLRCTFCCSNRC-GTSCCPSSGILCC 368
C N C S T C + C CCP G CC
Sbjct: 379 CDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCC 415
>12_01_0030 + 262452-263210,263332-263575,263867-264165
Length = 433
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 339 CCPSSGILCCFAILCWCCSNPASGSLHSPCS 431
C P CF LC C P + LH PC+
Sbjct: 324 CSPVQNYNACFGRLCSFCDEPRT-ILHPPCA 353
>11_04_0242 - 15273774-15274043,15274131-15274235
Length = 124
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 378 LCWCCSNPASGSLHSPCSCCICCRLP 455
+C CC P + +PC I C +P
Sbjct: 78 VCTCCGGPHGVCIPAPCCYAINCNIP 103
>08_01_0436 + 3842143-3842850,3843140-3843314,3843829-3843911
Length = 321
Score = 28.3 bits (60), Expect = 4.0
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 426 CSCCICCRLP 455
C CC CCRLP
Sbjct: 128 CGCCCCCRLP 137
>02_02_0341 + 9141556-9142654,9143357-9143454
Length = 398
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -3
Query: 456 WVAGSICSRSRESVGSRWQDWSSTSIVWRSSIGCRYWGSKRCRTYWSSKRCSV 298
WV G C + + R +D + +++ S C +K T W CS+
Sbjct: 33 WVGGDHCHMFSKLLSIRCEDCPNLTVLLLPSFECSISDTKDINTIWFPNLCSL 85
>01_07_0360 + 43056226-43057566
Length = 446
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = +3
Query: 264 CNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCIC 443
CN IC +C++ CG C + C AI C NP + LH P C
Sbjct: 317 CN-ICFEQACSMEV-----KECGHQMCAA----CTLAICCHSKPNPKTLLLHPP--ACPF 364
Query: 444 CRLPI 458
CR I
Sbjct: 365 CRTTI 369
>10_08_0753 +
20324011-20324113,20324210-20324231,20324344-20324400,
20324704-20324785,20324903-20324998,20325265-20325389,
20325484-20325502,20325598-20325744
Length = 216
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Frame = +3
Query: 315 CSNRCGTSCCP----SSGILCCF 371
CS RCG S CP ++ + CCF
Sbjct: 71 CSGRCGESNCPEVCLATEVFCCF 93
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Frame = +3
Query: 276 CCSYSCTLRCTFCC---SNRCGTSCCPSSGILC-CFAIL-CW-CCSNPASGS 413
CCS C CC N+ C +C FA L C+ CC+ SGS
Sbjct: 665 CCSRLADCLCCMCCIKACNKMNDQCAIVMTQVCAAFACLGCYECCAELCSGS 716
>07_03_0953 + 22860954-22861262
Length = 102
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 348 WGSKRCRTYWSSKRCSVGCSYRSSKWSCNRGYGRSEGR 235
W R W +R S CS SS WS + G GR
Sbjct: 9 WMRMAGRQRWLKRRRSGACSRASSAWSRSGGCDTQNGR 46
>06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507
Length = 111
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 450 AGSICSRSRESVGSRWQDWSSTSIVWRSSIGCRYWGSKRCRTYWSSKRCSVGCSYRSSKW 271
A + S S + + Q + S++ I C+ S RC W + C+ C+ ++
Sbjct: 20 AAAASSSSHPQLVQQMQVKRARSLLQAPKIDCQGTCSGRCANNWKKEMCNKMCNVCCNRC 79
Query: 270 SC-NRGYGRSEGRCC 229
+C G G+ C
Sbjct: 80 NCVPPGSGQDTRHLC 94
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Frame = +3
Query: 276 CCSYS-CTLRCTFCCS----NRCGT-SCCPSSGILCC 368
C YS C T CC+ N C CCP G CC
Sbjct: 395 CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCC 431
>08_02_0773 + 21043553-21043813,21044775-21045203
Length = 229
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 255 YGRSEGRCCYQRTQCPAGDINLCSVWRN 172
Y ++ CCY R+ PA D + +W N
Sbjct: 40 YCDTKQSCCYPRSGKPAADFGIHGLWPN 67
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -2
Query: 448 RQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQE 335
RQ MQQ+Q R L LEQ Q A Q ++ L QQ+
Sbjct: 477 RQRMQQQQALQRRQLF-LEQQQQQAALQQQLMLEQQQQ 513
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 264 CNSICCSYSCTLRCTFCCSNRCGTSC--CPSSGILCCF 371
CN+ CCSY L C N CG S P GI F
Sbjct: 414 CNTDCCSYDLKLG-KVNCDNCCGYSIHYTPHIGIAILF 450
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 264 CNSICCSYSCTLRCTFCCSNRCGTSC--CPSSGILCCF 371
CN+ CCSY L C N CG S P GI F
Sbjct: 414 CNTDCCSYDLKLG-KVNCDNCCGYSIHYTPHIGIAILF 450
>02_03_0221 - 16554910-16555560
Length = 216
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 282 SYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCS-NPASGSL 416
S++ CT +NR T+C + LCCF +LC+ S A+GS+
Sbjct: 65 SFTADGSCT--AANRALTACLVGACALCCF-LLCFTDSYRDATGSV 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,048,575
Number of Sequences: 37544
Number of extensions: 228068
Number of successful extensions: 1064
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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