Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G02f
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    30   1.1  
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    28   3.2  
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    27   7.4  
At4g32170.1 68417.m04575 cytochrome P450, putative cytochrome p4...    27   9.8  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    27   9.8  

>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +2

Query: 14  IIHEHITVSLVV*KGVMNHE*MSGRPATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKN 193
           I  + I  ++V   GV +H      P  S   P+A  S   ++++P  K  L+    +  
Sbjct: 625 INEDDINTTIVNQDGVESHTFTI--PVASSDMPSAEESDNVWSLIPQLKRKLH----LHQ 678

Query: 194 RTSFSYLAGWKNHCSLVLSALLPP 265
           + +F +L  WKN    V+ A++ P
Sbjct: 679 KKAFEFL--WKNLAGSVVPAMMDP 700


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +2

Query: 89  PATSPSCPTAL----RSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSAL 256
           P ++PS P  L    R+P++ T +   K S N    + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSI-DRKNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 257 L 259
           L
Sbjct: 60  L 60


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 312 MSTTTCNCNSRDRVVYGGNSADSTREQW 229
           +ST++   +SR R   GGN A+ + E+W
Sbjct: 32  LSTSSTESSSRTRGGGGGNRAEKSSEEW 59


>At4g32170.1 68417.m04575 cytochrome P450, putative cytochrome p450,
           Arabidopsis thaliana, PID:G2252844
          Length = 506

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 420 GVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDRVVY 265
           G D     +SW F  L EN  V  KIH  + N    +S T  +  + D++VY
Sbjct: 310 GRDTTATALSWFFWLLSENPHVVAKIHQ-EININTDLSRTGNSQENVDKLVY 360


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 294 NCNSRDRVVYGGNSADSTREQWFFQPAKYEN-DVL 193
           N  +R  V+ G +S  S +   FF+P K+E+ DVL
Sbjct: 349 NTYTRCFVIQGSDSLASWKANLFFEPTKFEDTDVL 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,788,027
Number of Sequences: 28952
Number of extensions: 178044
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)