Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    48   6e-07
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    40   3e-04
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    31   0.14 
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   3.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.8  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 48.4 bits (110), Expect = 6e-07
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = +2

Query: 386 IYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           I +  +  IG TPL+RLN +  + G  C + AK EF NPGGS+KD
Sbjct: 13  IVSGFIGAIGRTPLIRLNTLSNETG--CNILAKAEFQNPGGSVKD 55


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +2

Query: 386 IYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           I N +   IG+T +VR+  + +  G  C++ AK EF+NPG S KD
Sbjct: 42  IVNGVEGLIGNTKMVRIKSLSQATG--CDILAKAEFLNPGNSPKD 84


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 407 TIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPG 505
           T G TP+  + R+ K  G + E+FAK E  N G
Sbjct: 12  TFGPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = -1

Query: 251 ISNLMNVILLKQVLNQVTVSLSMPDTL*IVQIT*FQSTRLLRSIMNLFSFPRDCSRQGGA 72
           +SN M ++  KQ+L+Q T+ LS+   L   +I  FQ   L+   MNL S P +  R G  
Sbjct: 250 LSNYMVILQQKQILSQDTI-LSIFTNL--NEILDFQRRFLVGLEMNL-SLPVEEQRLGAL 305

Query: 71  FL 66
           F+
Sbjct: 306 FI 307


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 382 VASKTS*IGHFLDQN*SSFKQY*IQLTNALPIKFLLINIRTAR 254
           VA +   IG F     +S  +  I++ NA+  + L +N+RTAR
Sbjct: 278 VAQRVDSIGRFAVATSASVHEA-IRIANAISKENLAVNVRTAR 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,544
Number of Sequences: 5004
Number of extensions: 35749
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)