Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605... 54 9e-08
06_03_0491 - 21383036-21383161,21383246-21383439,21383627-213837... 40 0.002
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 38 0.006
06_03_0486 - 21344680-21344805,21344922-21345115,21350027-213501... 36 0.020
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 36 0.020
02_02_0105 + 6810839-6810913,6811005-6811132,6811562-6811764,681... 36 0.020
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 36 0.026
12_02_1181 - 26732439-26732528,26732883-26732963,26733104-267331... 34 0.080
04_01_0339 - 4429742-4429840,4429932-4430012,4430232-4430291,443... 34 0.080
11_06_0091 + 19967390-19969825 29 3.0
06_03_0834 - 25206825-25207075,25207326-25207424,25207531-252082... 29 3.0
02_05_0492 - 29476883-29476949,29477030-29477166,29477292-294773... 27 6.9
11_06_0110 + 20212221-20214011,20214072-20214368 27 9.1
>03_02_0162 +
6053144-6053365,6053474-6053548,6054477-6054623,
6054749-6055300,6055387-6055622,6055914-6056130
Length = 482
Score = 53.6 bits (123), Expect = 9e-08
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +2
Query: 359 NSRSFTRNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
+SRS R ++E IG+TPL+R+N + G CE+ K EF+NPGGS+KD
Sbjct: 39 SSRSSGRRTRRKGLVEAIGNTPLIRINSLSDATG--CEILGKAEFLNPGGSVKD 90
>06_03_0491 -
21383036-21383161,21383246-21383439,21383627-21383785,
21383904-21384029,21384290-21384492,21384691-21384818,
21385691-21385783
Length = 342
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 386 IYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
I +NI + IG TPL+ + IPK G++ + K E P S+KD
Sbjct: 25 IASNIAQLIGWTPLIEMKNIPKKEGIQTRLIGKMETYQPLFSVKD 69
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 368 SFTRNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
S I +NI + IG TPLV + I K+ G++ + K E P S+KD
Sbjct: 134 SSREENIASNITQLIGWTPLVEMKNIAKNEGVQARLVGKMEAYQPLCSVKD 184
>06_03_0486 -
21344680-21344805,21344922-21345115,21350027-21350185,
21350428-21350553,21350784-21350986,21351169-21351296,
21351631-21351741
Length = 348
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 386 IYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
I +N+ + IG TPL+ + I K G++ + K E P S+KD
Sbjct: 31 IASNVAQLIGWTPLIEMKNIAKKEGIQARLVGKMEAYQPLFSVKD 75
>03_05_1124 +
30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +2
Query: 386 IYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
I +++ IG+TPLV LN++ G E ++ AK E + P S+KD
Sbjct: 8 IASDVTALIGNTPLVYLNKVVD--GCEAQIAAKLEIMEPCSSVKD 50
>02_02_0105 +
6810839-6810913,6811005-6811132,6811562-6811764,
6811829-6811957,6812348-6812506,6812610-6812695,
6812908-6813042
Length = 304
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 386 IYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
I +NI + IG TPL+ L I K G+ + K E P S+KD
Sbjct: 19 IASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKD 63
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 35.5 bits (78), Expect = 0.026
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 368 SFTRNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
S + I +I + +G TPL+ LNRI + G+ + K E P S+KD
Sbjct: 16 SSSDEHIATDITQLVGWTPLIELNRIVRKDGVNARIVGKLESYQPLCSVKD 66
>12_02_1181 -
26732439-26732528,26732883-26732963,26733104-26733163,
26733372-26733451,26733815-26733866,26733987-26734124,
26734203-26734466,26735895-26735952,26736153-26736262,
26736385-26736432,26736812-26736823
Length = 330
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 386 IYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
I ++ E IG+TPLV LNR+ G + AK E + P S+KD
Sbjct: 14 IAKDVTELIGNTPLVYLNRVTD--GCVGRVAAKLESMEPCSSVKD 56
>04_01_0339 -
4429742-4429840,4429932-4430012,4430232-4430291,
4430715-4430794,4430923-4430974,4431045-4431182,
4431449-4431712,4432031-4432088,4433261-4433370,
4433604-4433795
Length = 377
Score = 33.9 bits (74), Expect = 0.080
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 383 RIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
+I ++ + IG TP+V LN++ + G + AK EF+ P S+KD
Sbjct: 57 KIRDSASQLIGRTPMVYLNKVTE--GCGARIAAKLEFLQPSFSVKD 100
>11_06_0091 + 19967390-19969825
Length = 811
Score = 28.7 bits (61), Expect = 3.0
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = +1
Query: 4 RAVNACQLRLCYHVTHVAVKSRKAPPCRLQSRGNEN-----RFIIERNSRVD*N*VIWTI 168
R +N + LCY+ + V PP R++ + +F S+V ++ I
Sbjct: 315 RLINLKSIYLCYNSLKIVVDPEWLPPFRVEKAYFSSCWMGPKFPAWLQSQVY---IVELI 371
Query: 169 YSVSGIDKETVT*FKTCFSKMTFIKL 246
+ +GID F T FSK TF+++
Sbjct: 372 MNDAGIDDTFPDWFSTTFSKATFLEI 397
>06_03_0834 -
25206825-25207075,25207326-25207424,25207531-25208285,
25209073-25209388,25210472-25210514
Length = 487
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 419 TPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIK 517
TPL+R R+ K G +++ K E +P GS K
Sbjct: 116 TPLIRARRLEKLLGTPAKIYYKYEGTSPAGSHK 148
>02_05_0492 -
29476883-29476949,29477030-29477166,29477292-29477383,
29477490-29477587,29477677-29477804,29477883-29478026,
29478108-29478397,29478553-29478739,29479085-29479210,
29480488-29480538,29480952-29481002,29482639-29484054
Length = 928
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 80 LVDYNHEEMRIGSLSNVTAV*IEIKLSGRSTVCQALIKKPS 202
L YN E+ +G VT + L G+ T+C+ L + S
Sbjct: 820 LRQYNREQDYLGDPKGVTVQILSRSLEGKLTICRCLFMEKS 860
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 31 LCYHVTHVAVKSRKAPPCRLQ-----SRGNENRFIIERNSRVD*N*VIWTIYSVSGIDKE 195
LCY+ + V PP RL+ S F S+VD ++ S +GI+
Sbjct: 439 LCYNYLEIVVDPEWLPPFRLEKAYFASTSMGPSFPSWLQSQVD---ILELAMSDAGINDT 495
Query: 196 TVT*FKTCFSKMTFIKL 246
F T FSK TF+++
Sbjct: 496 FPDWFSTTFSKATFLEM 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,774,546
Number of Sequences: 37544
Number of extensions: 189506
Number of successful extensions: 302
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -