Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)               71   4e-13
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)                    40   0.001
SB_18116| Best HMM Match : PALP (HMM E-Value=0)                        40   0.001
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 30/42 (71%), Positives = 35/42 (83%)
 Frame = +2

Query: 395 NILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           NIL+ IGDTPLVR+N I K YGL+CE+ AKCEF N GGS+KD
Sbjct: 3   NILQKIGDTPLVRINNIGKTYGLKCELLAKCEFFNAGGSVKD 44


>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
          Length = 129

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 449 KDYGLECEMFAKCEFVNPGGSIKD 520
           K  GL+CE+ AKCEF+NP GS+KD
Sbjct: 4   KRCGLKCEVVAKCEFMNPVGSLKD 27


>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
          Length = 470

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +2

Query: 449 KDYGLECEMFAKCEFVNPGGSIKD 520
           K  GL+CE+ AKCEF+NP GS+KD
Sbjct: 4   KRCGLKCEVVAKCEFMNPVGSLKD 27


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 368 SFTRNRIYNNILETIGDTPLVR 433
           S +R+ IYNN LETI  T  +R
Sbjct: 750 SVSRSPIYNNFLETINGTSTIR 771


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 1   IRAVNACQLRLCYHVTHVAVKSRKAPPCRLQSRGNENRFIIERNSRV 141
           I+A+    LR C HV    +   K    R++S     R I E+N++V
Sbjct: 490 IKAIGNAGLRACQHVILAYLNFDKCTELRVESVWALRRLINEKNTKV 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,499,978
Number of Sequences: 59808
Number of extensions: 246373
Number of successful extensions: 486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)