Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical ...    61   5e-10
Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical pr...    60   9e-10
Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical pr...    60   9e-10
Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical p...    43   1e-04
Z83236-2|CAB05778.1|  337|Caenorhabditis elegans Hypothetical pr...    41   6e-04
U97004-6|AAO26010.1|  304|Caenorhabditis elegans Hypothetical pr...    39   0.002
U97004-4|AAB52276.1|  337|Caenorhabditis elegans Hypothetical pr...    39   0.002
AF016425-2|AAB65342.1|  337|Caenorhabditis elegans Hypothetical ...    39   0.002

>AC024136-1|AAF35961.1|  755|Caenorhabditis elegans Hypothetical
           protein F54A3.4 protein.
          Length = 755

 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 23/48 (47%), Positives = 35/48 (72%)
 Frame = +2

Query: 377 RNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           R  + +++L+ IG TPLV+L  +PK +G+ C ++ KCEF+N GGS KD
Sbjct: 333 RPLVLDSVLDAIGKTPLVKLQHVPKAHGVRCNVYVKCEFLNAGGSTKD 380


>Z72518-3|CAB63415.2|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 23/48 (47%), Positives = 35/48 (72%)
 Frame = +2

Query: 377 RNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           R  + + +L+ IG TPLV+L  IPK +G++C ++ KCE++N GGS KD
Sbjct: 375 RPLVLDTVLDAIGKTPLVKLQHIPKAHGVKCNVYVKCEYMNAGGSTKD 422



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 389 YNNILETIG-DTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           YN ILE     TPLV L ++  ++ L+ +++ K E++N  GS++D
Sbjct: 19  YNTILEAAQRPTPLVPLKKLKVEHQLQSDIYVKLEYLNIAGSLED 63


>Z49131-7|CAA88980.3|  704|Caenorhabditis elegans Hypothetical
           protein ZC373.1 protein.
          Length = 704

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 23/48 (47%), Positives = 35/48 (72%)
 Frame = +2

Query: 377 RNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           R  + + +L+ IG TPLV+L  IPK +G++C ++ KCE++N GGS KD
Sbjct: 375 RPLVLDTVLDAIGKTPLVKLQHIPKAHGVKCNVYVKCEYMNAGGSTKD 422



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +2

Query: 389 YNNILETIG-DTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           YN ILE     TPLV L ++  ++ L+ +++ K E++N  GS++D
Sbjct: 19  YNTILEAAQRPTPLVPLKKLKVEHQLQSDIYVKLEYLNIAGSLED 63


>Z78415-10|CAB01676.2|  341|Caenorhabditis elegans Hypothetical
           protein C17G1.7 protein.
          Length = 341

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 377 RNRIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           RN I  N    IG+TP+V +N++ K  GL   +  K E++NP GS+KD
Sbjct: 4   RNSIGENAAALIGNTPMVYINKLTK--GLPGTVAVKIEYMNPAGSVKD 49


>Z83236-2|CAB05778.1|  337|Caenorhabditis elegans Hypothetical
           protein K10H10.2 protein.
          Length = 337

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +2

Query: 404 ETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           E IG+TPL++LN+I KD G    +  K E++NP  S+KD
Sbjct: 12  ELIGNTPLLKLNKIGKDLG--ASIAVKVEYMNPACSVKD 48


>U97004-6|AAO26010.1|  304|Caenorhabditis elegans Hypothetical
           protein R08E5.2c protein.
          Length = 304

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +2

Query: 404 ETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           +TIG+TPLV L  I K  GL+  +  K E++NP  S+KD
Sbjct: 12  DTIGNTPLVLLRNISK--GLDARIAVKVEYLNPSCSVKD 48


>U97004-4|AAB52276.1|  337|Caenorhabditis elegans Hypothetical
           protein R08E5.2a protein.
          Length = 337

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +2

Query: 404 ETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           +TIG+TPLV L  I K  GL+  +  K E++NP  S+KD
Sbjct: 12  DTIGNTPLVLLRNISK--GLDARIAVKVEYLNPSCSVKD 48


>AF016425-2|AAB65342.1|  337|Caenorhabditis elegans Hypothetical
           protein F59A7.9 protein.
          Length = 337

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +2

Query: 404 ETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           +T+G+TPLV L  I K  GL+  +  K E++NP  S+KD
Sbjct: 12  DTVGNTPLVLLRNITK--GLDARIAVKIEYLNPSCSVKD 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,490
Number of Sequences: 27780
Number of extensions: 194899
Number of successful extensions: 399
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)