Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    75   6e-16
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 74.5 bits (175), Expect = 6e-16
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = +2

Query: 383 RIYNNILETIGDTPLVRLNRIPKDYGLECEMFAKCEFVNPGGSIKD 520
           +I  +IL  IG TPL++LN IPK YG++CE++AKCEF+NPGGS+KD
Sbjct: 34  KIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKD 79


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 368 SFTRNRIYNNILETIGDTPLVRLNRIPKDY 457
           SF  +++YN +L  I     V+  +IP+++
Sbjct: 673 SFLFSQLYNALLILISTVYAVKTRKIPENF 702


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 478 KHFTFQAIVFWNSIESNKRCITDSF 404
           KHF +  ++F +S +++ R +   F
Sbjct: 163 KHFNYMKVIFIHSSDTDGRALLGRF 187


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 368 SFTRNRIYNNILETIGDTPLVRLNRIPKDY 457
           SF  +++YN +L  I     V+  +IP+++
Sbjct: 763 SFLFSQLYNALLILISTVYAVKTRKIPENF 792


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,177
Number of Sequences: 438
Number of extensions: 2278
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)