Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    28   0.067
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    28   0.067
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.27 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 431 GISELACAIVLRDVLQALQYLHKQLYIHR 517
           G+S L    +  DVL+ ++YLH Q  +HR
Sbjct: 693 GLSWLERIQIALDVLEGIRYLHSQGLVHR 721


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 431 GISELACAIVLRDVLQALQYLHKQLYIHR 517
           G+S L    +  DVL+ ++YLH Q  +HR
Sbjct: 731 GLSWLERIQIALDVLEGIRYLHSQGLVHR 759


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = +2

Query: 305 ELHHANILPYLASFVHGRELYVVSPLMSFGSCRDILDRYFPEGISELACAIVLRDVLQAL 484
           +  H N++           + +++  M  GS    L R        L    +LR +   +
Sbjct: 690 QFEHPNVIFLQGVVTKSNPVMIITEFMENGSLDTFL-RANDGKFQVLQLVGMLRGIASGM 748

Query: 485 QYLHKQLYIHR 517
           QYL +  Y+HR
Sbjct: 749 QYLAEMNYVHR 759


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 311 AALSLSIRLAGSKLLFLFLC 252
           + LSLS+    S L+F  LC
Sbjct: 18  SVLSLSLTSLASSLIFTILC 37


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 311 AALSLSIRLAGSKLLFLFLC 252
           + LSLS+    S L+F  LC
Sbjct: 18  SVLSLSLTSLASSLIFTILC 37


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 311 AALSLSIRLAGSKLLFLFLC 252
           + LSLS+    S L+F  LC
Sbjct: 18  SVLSLSLTSLASSLIFTILC 37


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 311 AALSLSIRLAGSKLLFLFLC 252
           + LSLS+    S L+F  LC
Sbjct: 18  SVLSLSLTSLASSLIFTILC 37


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 81  MKYELQNKQKIHFRTY 34
           M+  + NKQ +HF  Y
Sbjct: 184 MRRNVLNKQHVHFHDY 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,943
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)