Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.18 
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    30   0.18 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   3.9  
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    25   5.2  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    25   6.8  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 174 LVLFYFIFLLYCVHIYDFGILN--RKIFLTFFSEISFHFYICIYFFVIINLYISIL 13
           L+LF+F  L +    + F  L    +IF+ +FS      +   +FF+ + +++S L
Sbjct: 116 LLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPI-LHFLFFFFLCVCVFLSFL 170


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 132 IYDFGILNRKIFLTFFSE-ISFHFYICIYFFVIINLYI 22
           + ++G+ NRK+ + F  +  SF +Y+C +F   + LYI
Sbjct: 141 VLNWGVRNRKVIIRFCEQGYSFFYYLCFWF---LGLYI 175


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 155 MK*NSTSCKSWIYSRTVSYIIYGYVYRKYFKNSAT 259
           M+ N T+ K+W      SY  +   YR +F N+ T
Sbjct: 563 MQNNGTNLKNWRILLKASYKFWLRTYRVFFLNNGT 597


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 40  DKEINTNIEMEGNLTKECQEYLSIQNSEVIDVYAVQEEYEIE*YKL*VLDLLQDCF 207
           D E+   +++   L ++C++ +++  SEV+++  V    +     L VL    DCF
Sbjct: 66  DNEVIIGLKICKTLVQKCRDNINVMASEVVNMLLVASSSK----NLEVLSACVDCF 117


>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 7   DIENTYIQINDDKEINTNIEMEGNLTKECQEYLSIQNSEVIDVYAVQEE 153
           D ++   + N D E          + K+ +EY   Q+   +D YA  +E
Sbjct: 76  DTDDEEEEENPDAEFRWGYSARRRIRKQREEYFKNQDKSPLDAYADDDE 124


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 162 YFIFLLYCVHIYDFGILNRKIFLTFFSEISFHFYICIYFFVII 34
           YFI  +        GI+N  +   F SE+      C+Y F I+
Sbjct: 122 YFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIM 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,922
Number of Sequences: 5004
Number of extensions: 36365
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)