Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1637| Best HMM Match : Ion_trans (HMM E-Value=7.6e-10)              30   1.3  
SB_4729| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          28   5.4  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   7.1  
SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)                 27   9.4  
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_1637| Best HMM Match : Ion_trans (HMM E-Value=7.6e-10)
          Length = 216

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -3

Query: 156 IFLLYCVHIYDFGILNRKIFLTFFSEISFHFYICIYFFVIINLYISILNIT 4
           IF L+ + + DF     +        + F  Y+   FFV++N++++I+N T
Sbjct: 143 IFTLFRIILGDFDFHQIENANRVLGPLFFMTYVFFVFFVLLNMFLAIINDT 193


>SB_4729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 227 HIHILCMKQSWSKSRTYNLYYSISYSSCTAYTSMTSE 117
           H H    +Q W  SR Y+L  S+ Y SC  +  +T +
Sbjct: 17  HFHF---RQKWRYSRRYSLGISLRYYSCVTHWGVTRD 50


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
 Frame = -3

Query: 171  VLFYFIFLLYCVHIYDFGILNRKIFLT------FFSEISFHFYICI----YFFVIINLYI 22
            ++ +  F     H Y F I+    F        FFS I+ HF+  I    YFF II  + 
Sbjct: 1013 IITHHFFFSIITHHYFFSIITHHYFFVIITHHYFFSIITHHFFFSIITDHYFFSIITHHY 1072

Query: 21   SILNITN 1
              + IT+
Sbjct: 1073 FFVIITH 1079


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 141 CVHIYDFGILNRKIFLTFFSEISFHFYICIYFFVIINLYISIL 13
           C   Y+ G+ N      + + I F  +I + F +IIN+YI+I+
Sbjct: 763 CDPTYE-GLPNGDCGTPWLAHIYFTSFILLTFLIIINMYIAII 804


>SB_386| Best HMM Match : zf-C2H2 (HMM E-Value=1.7e-25)
          Length = 669

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 49  INTNIEMEGNLTKECQEYLSIQNSEVID 132
           I  N++   N+ K+C E+L I+ +   D
Sbjct: 178 IRKNLQSHSNIMKDCTEFLVIERNRTFD 205


>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 104 FLFKIPKS*MCTQYKRNMK*NSTSCKSWIYSRTVSYIIYGYVYR 235
           FL+++P S  C  +   +   STSC  ++Y   VS     ++YR
Sbjct: 724 FLYRLPVSTSCIDFLYRLP-VSTSCIYYLYRLPVSTTCIDFLYR 766


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,454
Number of Sequences: 59808
Number of extensions: 245915
Number of successful extensions: 878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)