Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.62 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.62 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.62 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          25   0.62 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.62 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          25   0.62 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          25   0.62 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.62 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   1.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.7  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   ISDIENTYIQINDDKEI-NTNIEMEGNLTKECQEYLSIQNS 120
           I +I N   +I + + +   NIE   N TK C++Y    NS
Sbjct: 176 IKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNS 216


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 261 EVALFLKYFLYTYPYIMY 208
           E A   K F YTY Y MY
Sbjct: 249 EAAKMAKAFTYTYNYSMY 266


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 452 CINTLHWLIILH 417
           C N ++W+I LH
Sbjct: 418 CFNLMYWIIYLH 429


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 452 CINTLHWLIILH 417
           C N ++W+I LH
Sbjct: 418 CFNLMYWIIYLH 429


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 300  NGCNFLYYIIYHREVALF 247
            NGC  LY+ I +R +  F
Sbjct: 1525 NGCPILYFTIQYRPINEF 1542


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 300  NGCNFLYYIIYHREVALF 247
            NGC  LY+ I +R +  F
Sbjct: 1521 NGCPILYFTIQYRPINEF 1538


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 57  CIYFFVIINLYISILNI 7
           CI FF+I  ++I++L I
Sbjct: 210 CILFFLIPMVFIAVLYI 226


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 76  NLTKECQEYLSIQNSEVIDVYAVQEEYEIE 165
           ++ KEC+++L       + V  VQE   I+
Sbjct: 43  DIAKECEQFLGPVGFGGVQVSPVQENIVID 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,887
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)