Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    34   0.050
At3g47790.1 68416.m05206 ABC transporter family protein contains...    30   1.1  
At5g08160.2 68418.m00953 serine/threonine protein kinase, putati...    29   1.9  
At5g08160.1 68418.m00952 serine/threonine protein kinase, putati...    29   1.9  
At2g04495.1 68415.m00454 expressed protein                             27   7.7  

>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 34.3 bits (75), Expect = 0.050
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 1    ISDIENTYIQINDDKEINTNIEMEGNLTKECQEYLSIQNSEV 126
            +S  +   +++ + KEI  N+E++    ++CQE LS +N ++
Sbjct: 2101 VSHAQMLEVRLQESKEITRNLEVDTEKARKCQEKLSAENKDI 2142


>At3g47790.1 68416.m05206 ABC transporter family protein contains
           Pfam domain, PF00005: ABC transporter
          Length = 901

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 174 LVLFYFIFLLYCVHIYDFGILNRKIFLTFFSEISFHFYICIYFFVIINLYISI 16
           +V + +  L+  +++  F I    I L FF    +   + ++FF+ INL IS+
Sbjct: 363 IVSYTYFLLISILYMLCFAIFGSLIGLNFFRLNDYSIQL-VFFFICINLQISV 414


>At5g08160.2 68418.m00953 serine/threonine protein kinase, putative
           identical to serine/threonine protein kinase
           [Arabidopsis thaliana] gi|2109293|gb|AAB69123
          Length = 311

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -1

Query: 425 ILHPRAGTRPRAENIFLYINSLIAR 351
           +L P+A  RPR ++I ++++ LIA+
Sbjct: 284 MLQPQAAVRPRIDDIIIHVDKLIAK 308


>At5g08160.1 68418.m00952 serine/threonine protein kinase, putative
           identical to serine/threonine protein kinase
           [Arabidopsis thaliana] gi|2109293|gb|AAB69123
          Length = 347

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -1

Query: 425 ILHPRAGTRPRAENIFLYINSLIAR 351
           +L P+A  RPR ++I ++++ LIA+
Sbjct: 320 MLQPQAAVRPRIDDIIIHVDKLIAK 344


>At2g04495.1 68415.m00454 expressed protein
          Length = 202

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = +1

Query: 34  NDDKEINTNIEMEGNLTKECQEYLSIQNSEV 126
           +DD+EIN ++    +L K+C++++    +E+
Sbjct: 165 HDDEEINDSLLSVEDLNKKCEDFIRKMKAEI 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,571,749
Number of Sequences: 28952
Number of extensions: 169458
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)