Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306F10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 231 3e-61
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 29 2.3
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 3.1
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 4.1
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 27 7.1
SB_47426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 27 9.4
SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74) 27 9.4
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_38698| Best HMM Match : MiaE (HMM E-Value=5.8) 27 9.4
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 231 bits (564), Expect = 3e-61
Identities = 100/147 (68%), Positives = 125/147 (85%)
Frame = -2
Query: 490 RITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDF 311
RIT EEAKYKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+
Sbjct: 537 RITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDY 596
Query: 310 IKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 131
IKF++GN+ M+ GGRN+GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG
Sbjct: 597 IKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGN 656
Query: 130 KAYISLPRGKGIRLTIAEERDKRIAAK 50
K Y+SLP+GKG+RL+IAEERD+RIA K
Sbjct: 657 KPYVSLPKGKGVRLSIAEERDRRIAEK 683
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.5 bits (63), Expect = 1.8
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Frame = -1
Query: 329 YEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVE-QR 153
Y G+HQV + + G P G H+V E + T H+V +R
Sbjct: 148 YTTRGVHQVHI-----ERGSPKYTTRGGHQVHNERGSPSTQREGVTKYTTRGGHQVHNER 202
Query: 152 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 57
EGV +R GH H RG+ HR
Sbjct: 203 GSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = -2
Query: 487 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 308
+TP+ K C+V R++TGP +++ +G + +++ ++ + + + F
Sbjct: 290 VTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV--FP 347
Query: 307 KFESGNLCM 281
FE G CM
Sbjct: 348 DFEKGVACM 356
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = -2
Query: 499 QSPRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKI 320
QSPR + Y + +++ A N Y+V + G + +PD + N + + + +
Sbjct: 2593 QSPRPMNKLIVYGVLEIECGADIVINATYIVVYGGFIVGFPDQ--RCNSKVVISLRGSHS 2650
Query: 319 MDFIKFESG 293
MD + E G
Sbjct: 2651 MDITQIEGG 2659
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 161 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 69
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 160 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 47
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 160 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 47
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -1
Query: 254 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 81
C H H + + + H +H LH TH+ E + R G G R PH+R
Sbjct: 18 CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +3
Query: 60 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRD 239
+ LSR + R+P P ++ +P P T + + +CPV + TMS P + R
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFPYPVYR- 101
Query: 240 TMVPTRPKLRPPV-IIHKFPDSNLMKSIIFVV 332
P L P + + P S + ++ F++
Sbjct: 102 VHYPLSRVLYPVYRVFYHLPVSFIPYTVSFII 133
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 248 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 78
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 182 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 54
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = -2
Query: 478 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 308
E+A +C++ R+ P+ LV G +++ I + Q+ + + +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030
Query: 307 KFESGNLCMITGGRNLGRV 251
K + NLC G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -1
Query: 212 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 84
+H H+ HGTH +H V + H + V H HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180
>SB_47426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 257 ACGHH-RVPRETSRLLRHCAHQGLHGT 180
ACG R+P + S L R+CA G +GT
Sbjct: 66 ACGSFVRLPEDNSILTRNCAKWGSNGT 92
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 34 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRR 177
P P R +CP G C A +C+P C CR+ + + RR
Sbjct: 642 PQTANPMQRQSCP------GACASSCAPKCSPGC-CRILSATGQNRRR 682
>SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74)
Length = 730
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 520 RELRADSQSPRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI 386
R ++D +SP ++ K +L +V P N L RTI
Sbjct: 664 RAKQSDEKSPSLSSTMTKQQLLRVAEATMKPPNTKLLTIESARTI 708
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 173 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 42
RH + + NRQ H+ RQ H HRR + HR + +R
Sbjct: 160 RHRQKHQRRNRQKHQ----RRQRQEHQRRHRRQHQRRHRQKHQR 199
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 173 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 33
+H + ++VHN++GH G + +G QA + + R +G
Sbjct: 880 KHHIIRQVHNKEGHMGPTQVLSSVREKYWILKGGAQAKQEEFGRIIG 926
>SB_38698| Best HMM Match : MiaE (HMM E-Value=5.8)
Length = 284
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 276 REAVTWGVWAPSCP-ARDIPAPSTLCTSRTPRDTPSP 169
R+ V W W P C R P ++ R PR TP P
Sbjct: 115 RDGVEWS-WLPECDHLRSPPDVASTPVRRYPRRTPKP 150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,452,762
Number of Sequences: 59808
Number of extensions: 431135
Number of successful extensions: 1497
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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