Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F09f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   6.6  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
           +++RT YY   +I+P V I  ++
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMA 229


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
           +++RT YY   +I+P V I  ++
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMA 229


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
           +++RT YY   +I+P V I  ++
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMA 229


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
           +++RT YY   +I+P V I  ++
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMA 229


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
           +++RT YY   +I+P V I  ++
Sbjct: 207 IRRRTLYYFFNLIVPCVLISSMA 229


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 174 IFKRTCRVNNSIYLDHYS 227
           IF+  CR N++ +++H S
Sbjct: 307 IFRAYCRENHASWVNHLS 324


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 202 IQSTWIIIHYLLHIFQ-TSMTAVSIIIFLYMYVIKKIVRLIEFQ 330
           +Q  WI++H +  ++Q T+   + ++    +  IK+ V ++  Q
Sbjct: 304 LQVAWIVLHLIRLMYQVTTNLVLKLLTSPLLPDIKEQVEILAVQ 347


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,718
Number of Sequences: 336
Number of extensions: 2454
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)