Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    27   1.3  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.3  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   3.9  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   6.8  

>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 198 NNSIYLDHYSLLITYFSD 251
           NN IYL  YS++  YFSD
Sbjct: 485 NNDIYLKAYSIIEKYFSD 502


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 424 MHVINICNINYLNSSSQSQ-TDANY*ALLEHFIEIQSIE 311
           ++++NI N+N   S SQ Q TD N+   +   I  Q +E
Sbjct: 267 LNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE 305


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = -2

Query: 133 YIIMPYVTIKEISKFIFYIKVR*TLLKVHSRRLLYMFQKYI 11
           Y+ +P+ T+K +   +F +    + + + ++ L+Y+F K+I
Sbjct: 199 YVRLPFWTLKHMFSGLFQVLGVQSCVVIVTKGLMYLFDKHI 239


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 189 CRVNNSIYLDHYSLLITYFSDFYDSCLYYYFPLHVCD 299
           C V  SIY  +    +  FSD  D   Y++  +H CD
Sbjct: 378 CCVVLSIYWPYLEDKLLKFSDLGDIFEYFFSLIHDCD 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,685
Number of Sequences: 5004
Number of extensions: 36697
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)