Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919...    28   5.2  

>03_02_0528 +
           9189215-9189330,9190111-9190204,9190654-9190743,
           9191601-9191717,9192187-9192259,9192335-9192453,
           9192569-9192690,9192777-9192953,9193189-9193333,
           9193458-9193636,9193742-9193991
          Length = 493

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 208 STWIIIHYLLHIFQTSMTAVSIIIFLYMYVIKKIVRLIEF 327
           S W ++H  +    TS+  + +IIF  M +++K+  L+E+
Sbjct: 104 SYWKMMHKYIGADVTSLVTLPVIIFEPMTMLQKMAELMEY 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,149,669
Number of Sequences: 37544
Number of extensions: 165690
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)