Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   4.1  
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)                28   5.4  
SB_26540| Best HMM Match : UBA (HMM E-Value=6.2)                       27   7.1  
SB_25636| Best HMM Match : UBA (HMM E-Value=6.9)                       27   7.1  
SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)                       27   7.1  
SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_1036| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_50915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_42177| Best HMM Match : UBA (HMM E-Value=6.9)                       27   7.1  
SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19)                   27   7.1  
SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)                        27   7.1  
SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   27   9.4  

>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 930

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 166 LLKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
           ++K+R+ YY  Y+I+P V I  ++  +F +
Sbjct: 224 VVKRRSLYYIMYLIIPAVAIALLTLLVFLL 253


>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
          Length = 1087

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 183 RTCRVNNSIYLDHYSLLIT-YFSDFYDSCLYYYFPLHVCD 299
           +T   N+ +YLD   LL+   F +F  +CL YY  L  CD
Sbjct: 776 KTMGDNHDLYLDSDILLLADVFENFRKTCLEYY-KLDPCD 814


>SB_26540| Best HMM Match : UBA (HMM E-Value=6.2)
          Length = 207

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 134 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171


>SB_25636| Best HMM Match : UBA (HMM E-Value=6.9)
          Length = 205

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 134 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171


>SB_24878| Best HMM Match : JTB (HMM E-Value=1.6)
          Length = 603

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 402 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 439


>SB_4458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 134 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171


>SB_1036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 74  TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 111


>SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 433 GSVMHVINICNINYLNSSSQSQTDANY*ALLEHFIEIQSIERF 305
           GS   V++ C I  +N++S SQT   Y   L+    +Q++ERF
Sbjct: 7   GSPKRVVDFCQIVVVNTTSSSQTLWAYRNELKR--ALQNVERF 47


>SB_50915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 261 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 298


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 189 CRVNNSIYLDHYSLLITYFSDFY-DSCLYYYF 281
           CR     Y+ H S+ ++Y S     +C YYYF
Sbjct: 585 CRAYRYYYVVHLSITVSYISLLLCRACRYYYF 616


>SB_42177| Best HMM Match : UBA (HMM E-Value=6.9)
          Length = 266

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 197 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 234


>SB_31340| Best HMM Match : DUF935 (HMM E-Value=0.19)
          Length = 339

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 134 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 171


>SB_4210| Best HMM Match : JTB (HMM E-Value=5.8)
          Length = 427

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 TYFSDFYDSCLYYYFPLHVC-D*KNRSID*ISIKCSNN 347
           T+ +D YD    Y FP+H C D  +R +  + +  SNN
Sbjct: 336 TWHADGYDKLKPYGFPMHACIDGFSRKVIWLYVTRSNN 373


>SB_50579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 217 IIIHYLLHIFQTSMTAVSIIIFLYMYVIKKIVRLIEFQ 330
           +I HYL+   +T +   S++I   +Y+I  ++ L+ ++
Sbjct: 434 LIFHYLIKSGETYIVGYSLVITGVIYIILGVIPLLRYR 471


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 339 NILLKFNQSNDFFNHIHVKENNN 271
           NI    N+SND  NHIH   +NN
Sbjct: 157 NISSSSNRSNDNNNHIHNSSDNN 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,120,240
Number of Sequences: 59808
Number of extensions: 239412
Number of successful extensions: 492
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)