Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306F09f
(521 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.067
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 28 0.067
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 27 0.15
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 26 0.20
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.36
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.62
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.1
U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein. 23 1.9
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 2.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 3.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 4.4
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 4.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 7.7
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 7.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 7.7
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.067
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
L+++T +Y+ +I+P V I +S +FY+
Sbjct: 232 LRRKTLFYTVNLIIPCVGISFLSVLVFYL 260
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.9 bits (59), Expect = 0.067
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
L+++T +Y+ +I+P V+I +S FY+
Sbjct: 231 LRRKTLFYTVNLIVPCVSISYLSVLAFYL 259
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.6 bits (56), Expect = 0.15
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = -2
Query: 166 LLKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
+++++T +Y+ +I+P V I + +FY+
Sbjct: 228 IIRRKTLFYTVNLILPTVLISFLCVLVFYL 257
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.20
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
L++R +Y +I+P + I ++ +FY+
Sbjct: 209 LRRRPMFYVFNLILPCILINSVALLVFYV 237
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.36
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
++++T +Y+ +I+P V I ++ +FY+
Sbjct: 245 MRRKTLFYTVNLIIPCVGITFLTVLVFYL 273
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 0.62
Identities = 7/29 (24%), Positives = 20/29 (68%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
++++T +Y+ +I+P + I ++ +FY+
Sbjct: 236 MRRKTLFYTVNLIIPCMGISFLTVLVFYL 264
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.1
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
++++T +Y+ II+P + I ++ FY+
Sbjct: 240 MRRKTLFYTVNIIIPCMGISFLTVLTFYL 268
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.1
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEISKFIFYI 77
++++T +Y+ II+P + I ++ FY+
Sbjct: 240 MRRKTLFYTVNIIIPCMGISFLTVLTFYL 268
>U66709-1|AAB07515.1| 182|Apis mellifera ankyrin protein.
Length = 182
Score = 23.0 bits (47), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 178 NMGGLLKKRTFYYSKYIIMPYVTIKEISKFIFYIK 74
N+G + K T Y + + +PY+T FI Y K
Sbjct: 125 NIGAVPKMATELYEESLFVPYIT-----NFIIYSK 154
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 309 DFFNHIHVKENNNRDSCHRSLKNM**VMNNDPSRLNCL 196
+ F + +V N R+ LKNM + D S NC+
Sbjct: 660 NIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNCV 697
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 3.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -2
Query: 166 LLKKRTFYYSKYIIMPYVTIKEIS 95
++++RT YY +I+P V I ++
Sbjct: 226 IIRRRTLYYFFNLIVPCVLIASMA 249
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMA 212
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMA 212
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMA 212
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMA 212
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMA 212
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 190 IRRRTLYYFFNLIVPCVLISSMA 212
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 258 IRRRTLYYFFNLIVPCVLISSMA 280
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -2
Query: 163 LKKRTFYYSKYIIMPYVTIKEIS 95
+++RT YY +I+P V I ++
Sbjct: 258 IRRRTLYYFFNLIVPCVLISSMA 280
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.8 bits (44), Expect = 4.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 411 FITCITDPVLD 443
FITC T P+LD
Sbjct: 320 FITCFTMPLLD 330
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 201 NSIYLDHYSLLITYFSDFYDS 263
+SI LD+ L+ F DF +S
Sbjct: 175 SSIPLDYIFLIFNQFQDFSES 195
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 201 NSIYLDHYSLLITYFSDFYDS 263
+SI LD+ L+ F DF +S
Sbjct: 175 SSIPLDYIFLIFNQFQDFSES 195
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 7.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 201 NSIYLDHYSLLITYFSDFYDS 263
+SI LD+ L+ F DF +S
Sbjct: 175 SSIPLDYIFLIFNQFQDFSES 195
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,752
Number of Sequences: 438
Number of extensions: 2342
Number of successful extensions: 25
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -