Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    28   4.4  
At1g74080.1 68414.m08580 myb family transcription factor (MYB122...    27   7.7  

>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 131 YNYALCNY*RDIKIHFLHQSTIDTIKS 51
           Y Y+ C Y RD+ +H++ +   D +KS
Sbjct: 308 YKYSGCAYYRDLIVHWMLEGYFDPVKS 334


>At1g74080.1 68414.m08580 myb family transcription factor (MYB122)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 333

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 195 VNNSIYLDHYSLLITYFSDFYDSCLY 272
           +N SI +D  SL  + FSD  D CLY
Sbjct: 227 INRSITVDATSLSSSTFSDSPDPCLY 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,126,448
Number of Sequences: 28952
Number of extensions: 160261
Number of successful extensions: 300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)