Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F08f
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    98   7e-22
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    81   1e-16
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   3.6  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    26   3.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.3  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 937

 Score = 97.9 bits (233), Expect = 7e-22
 Identities = 43/83 (51%), Positives = 62/83 (74%)
 Frame = -2

Query: 488  FTEKGYDKFPICMAKTSNSLTGDPAIKGAPTDFTLKINGIFVSVGAGFVVPMVGEISKMP 309
            FT++GY+  PIC+AKT  SL+ DP +KGAPT+FT+ I  + +S GAGF+ P+   IS +P
Sbjct: 855  FTKQGYNNLPICIAKTQYSLSHDPDLKGAPTNFTVPIRDMRLSAGAGFIYPLAAAISTIP 914

Query: 308  GLPTRPSIYDIDLNTKTGEIEGL 240
            GLPT+P+ Y+ID+  + G+I GL
Sbjct: 915  GLPTKPAYYNIDI-AENGDIVGL 936


>SPBC2G2.08 |ade9||C-1-
            tetrahydrofolatesynthase/methylenetetrahydrofolatedehydro
            genase/methylenetetrahydrofolatecyclohydrolase/formyltetr
            ahydrofolatesynthetase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 969

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 36/83 (43%), Positives = 54/83 (65%)
 Frame = -2

Query: 488  FTEKGYDKFPICMAKTSNSLTGDPAIKGAPTDFTLKINGIFVSVGAGFVVPMVGEISKMP 309
            F ++G+   PICMAKT  SL+ +P  +  P +FT+ I  + ++ GAGF+ P+  EI  +P
Sbjct: 887  FIKQGFGNLPICMAKTQYSLSHNPEFRNVPKNFTVPIRDMRLNAGAGFIYPLAAEIQTIP 946

Query: 308  GLPTRPSIYDIDLNTKTGEIEGL 240
            GLPT P+  +ID+  + GEI GL
Sbjct: 947  GLPTAPAYLNIDI-CENGEIVGL 968


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
 Frame = -2

Query: 395 DFTLKINGIFVSVGAGFVVPMVGEI-----SKMPGLPTRPSIYDIDLNTKTGEIEGLF*V 231
           DF LK+ G  V  G  F  P   +I      K   LPT  ++ D  +N+     E    V
Sbjct: 423 DFALKVVGAVVDYGWTFPKPKFSDILRDYWGKKANLPT--ALLDTSINSNWCNYEDTVQV 480

Query: 230 FTEFNNLEFIHIFELLNSLH 171
               N   ++    L+  +H
Sbjct: 481 SVRLNRPMYVRHISLIFPIH 500


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 132 STRGLIQNYFNILLYKIRVISDYYLL 55
           S   L +NYF+ILL K++  SD+ ++
Sbjct: 291 SKNTLPKNYFSILLSKLQPYSDFQII 316


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 209 EFIHIFELLNSLHTTARITHRYTKI 135
           E+ H F  L+ + T AR   R+T++
Sbjct: 224 EYFHAFSTLDKVETAARRVERFTEV 248


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 199 IFSNY*IRYIQLHELRIGTP--KLVHARLNTKLFQYFTI 89
           IF      ++ LHE+ +GTP  + VH      LF  F +
Sbjct: 478 IFEYIEFEFVDLHEVAVGTPLQQFVHNLSQKLLFLVFQL 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,231
Number of Sequences: 5004
Number of extensions: 44493
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)