Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F08f
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0315 + 16600387-16600557,16600652-16600801,16600874-166008...   103   1e-22
08_02_1239 + 25491034-25492378,25493719-25494575                       28   3.6  
02_05_0214 + 26823580-26823981                                         28   3.6  
08_02_1136 - 24614236-24615207                                         28   4.7  
03_06_0536 + 34578286-34578612,34578718-34578912,34578986-34579870     28   4.7  
04_01_0143 + 1659380-1659535,1659641-1659917,1660372-1660453,166...    27   6.3  
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788...    27   8.3  
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737           27   8.3  

>09_04_0315 +
           16600387-16600557,16600652-16600801,16600874-16600897,
           16601519-16602694,16603120-16603266,16603477-16603752
          Length = 647

 Score =  103 bits (246), Expect = 1e-22
 Identities = 43/84 (51%), Positives = 62/84 (73%)
 Frame = -2

Query: 491 IFTEKGYDKFPICMAKTSNSLTGDPAIKGAPTDFTLKINGIFVSVGAGFVVPMVGEISKM 312
           ++T++G+   PICMAKT  S +  P++KGAP+ F L I  +  S+GAGF+ P+VG +S M
Sbjct: 563 MYTKQGFSNLPICMAKTQYSFSHVPSMKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTM 622

Query: 311 PGLPTRPSIYDIDLNTKTGEIEGL 240
           PGLPTRP  Y+ID++T TG++ GL
Sbjct: 623 PGLPTRPCFYEIDVDTATGKVMGL 646


>08_02_1239 + 25491034-25492378,25493719-25494575
          Length = 733

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 348 AGAYRYEYSVDL*REVSGSSLDGGITG*GVRSLGHANRKF 467
           A A  Y Y     R+VSG     GITG  +RSL    R+F
Sbjct: 327 AAALGYLYVAKRRRKVSGGDDGSGITGTMIRSLAGGPREF 366


>02_05_0214 + 26823580-26823981
          Length = 133

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 310 PDCPRDLASTTLTSTPKQGKSKAFSKCSRNSIILNL 203
           P CP    ST   STP    S AF +C R+++ L +
Sbjct: 27  PSCPTPTPSTPTPSTPTPTPS-AFGRCPRDALKLGV 61


>08_02_1136 - 24614236-24615207
          Length = 323

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 292 GRVGSPGIFEISPTMGTTKPAPT 360
           G++ SPG + ++P  GTT PAP+
Sbjct: 215 GQIFSPGSY-VTPKFGTTSPAPS 236


>03_06_0536 + 34578286-34578612,34578718-34578912,34578986-34579870
          Length = 468

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 483 GKGIRQISDLHGQDFELLNR*SRHQGSSH 397
           G+   Q++ L+GQD E L R  R   SSH
Sbjct: 398 GEHSEQLASLNGQDAEALRRRRRRPASSH 426


>04_01_0143 +
           1659380-1659535,1659641-1659917,1660372-1660453,
           1660562-1660688,1660785-1660876,1661023-1661311,
           1662130-1662141
          Length = 344

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 304 CPRD-LASTTLTSTPKQGKSKAFSKCSRNSIILNLYI 197
           CP D +   T+TS P  GK++AFS  S   I +NL I
Sbjct: 128 CPFDQIPGKTITSKPLIGKTEAFSS-SATQIHINLDI 163


>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
            20480164-20481199,20481275-20481402,20481673-20481732,
            20481774-20481878,20481971-20482055,20482315-20482470,
            20482562-20482831,20482877-20483671,20483844-20483903,
            20484062-20485134
          Length = 1777

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 328  PTMGTTKPAPTDTNIPLIFSVKSVGAPLMAGSPVKEFEVLAM 453
            P MG   P P +TN+ ++++ +  G P  A     + + +AM
Sbjct: 1533 PNMGWVTPNPGNTNMNMMWATQGQGTPNAAAMVGTQMQGVAM 1574


>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
          Length = 767

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 124 SRGLILVYLCVIRAVVCSEFNNSKICINSRLLNSVNT*KRPSISPVLV 267
           +R LI   L ++  + C + N  +IC N RLL  +     P  SP L+
Sbjct: 351 TRELIHQGLQILERLACDDQNCREICCNQRLLTKIIA---PITSPALL 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,163,481
Number of Sequences: 37544
Number of extensions: 275655
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)