Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306F08f
(495 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36794| Best HMM Match : FTHFS (HMM E-Value=0) 36 0.014
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073) 29 2.8
SB_50583| Best HMM Match : DUF1470 (HMM E-Value=3.1) 28 3.7
SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 27 6.4
SB_22677| Best HMM Match : RhoGAP (HMM E-Value=9.4e-13) 27 6.4
SB_12981| Best HMM Match : RhoGAP (HMM E-Value=0) 27 6.4
SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_36794| Best HMM Match : FTHFS (HMM E-Value=0)
Length = 388
Score = 36.3 bits (80), Expect = 0.014
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 488 FTEKGYDKFPICMAKTSNSLTGDPAIKGAP 399
+ ++G++ PICMAKT SL+ P +KG P
Sbjct: 318 YKKQGFNDLPICMAKTHLSLSHKPELKGVP 347
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -3
Query: 151 IGTPKLVH----ARLNTKLFQYFTIQN*SYI*LLFTLTVNSCILFD 26
+G +VH AR TK+F YF + N S L+ T T+ +++D
Sbjct: 37 VGNAVVVHTAITARQQTKVFLYFLVANLSIAELINTCTIPFLVVYD 82
>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
Length = 863
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 286 STTLTSTPKQGKSKAFSKCSRNSIILNLYIF 194
+TT T+T KQG+S A+ + + +IIL + F
Sbjct: 84 TTTTTTTTKQGRSSAYQRQNLFTIILISFFF 114
>SB_50583| Best HMM Match : DUF1470 (HMM E-Value=3.1)
Length = 209
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 267 VEVNVVDARSRGQSGHLRDLPNHG 338
V++N++ + +R +GH+R +P+HG
Sbjct: 2 VQINILRSGNRAVAGHVRLVPDHG 25
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 267 VEVNVVDARSRGQSGHLRDLPNHG 338
V+++++ + +R +GHLR +P+HG
Sbjct: 80 VQIDILSSGNRAVAGHLRLVPDHG 103
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 267 VEVNVVDARSRGQSGHLRDLPNHG 338
V+++++ + +R +GHLR +P+HG
Sbjct: 106 VQIDILSSGNRAVAGHLRLVPDHG 129
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +3
Query: 267 VEVNVVDARSRGQSGHLRDLPNHG 338
V+++++ + +R +GHLR +P+HG
Sbjct: 132 VQIDILSSGNRAVAGHLRLVPDHG 155
Score = 27.1 bits (57), Expect = 8.5
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +3
Query: 267 VEVNVVDARSRGQSGHLRDLPNHG 338
V+++++ + +R +GH+R +P+HG
Sbjct: 28 VQIDILSSGNRAVAGHVRLVPDHG 51
>SB_10363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 310 PDCPRDLASTTLTSTPKQGKSKAFSKCSRNSIILNLYIFSNY 185
P P LA+ T +Q K+ SK RNS+++ +FSN+
Sbjct: 886 PASPGSLANQRPARTRQQPGRKSTSKNKRNSMVILGRVFSNH 927
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 346 KPAPTDTNIPLIFSVKSVGAPLMAGSPVKE 435
KP T +N P FSV + G+PL SPV++
Sbjct: 1366 KPESTLSNRPS-FSVTAFGSPLQTNSPVRK 1394
>SB_22677| Best HMM Match : RhoGAP (HMM E-Value=9.4e-13)
Length = 499
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 353 AGFVVPMVGEISKMPGLPTRPSIYDI--DLNTKTGEIEGLF*VFTEFNNLEFIHIFELLN 180
+GFV ++ E+S + GLP R Y + + +T+ ++ L + + + F + LL
Sbjct: 436 SGFVEAIIFELSGLNGLPNRYRFYRLSSEQSTRNSKLGALKSLVGQLPRINFDTLKLLLG 495
Query: 179 SLH 171
LH
Sbjct: 496 HLH 498
>SB_12981| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 251
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 353 AGFVVPMVGEISKMPGLPTRPSIYDI--DLNTKTGEIEGLF*VFTEFNNLEFIHIFELLN 180
+GFV ++ E+S + GLP R Y + + +T+ ++ L + + + F + LL
Sbjct: 132 SGFVEAIIFELSGLNGLPNRYRFYRLSSEQSTRNSKLGALKSLVGQLPRINFDTLKLLLG 191
Query: 179 SLH 171
LH
Sbjct: 192 HLH 194
>SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 251 IEGLF*VFTEFNNLEFIHIFELLNSLHTTARITHRYT 141
I+ +F ++T + ++ + +NS+H T + TH Y+
Sbjct: 101 IDDIFMIWTH-DEPSLLNFLQYINSIHPTIKFTHEYS 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,963
Number of Sequences: 59808
Number of extensions: 317561
Number of successful extensions: 797
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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