Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F08f
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical pr...   105   2e-23
U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical pr...   105   2e-23
Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC087078-5|AAK66024.2|  191|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U41552-2|AAC69104.1|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4a protein.
          Length = 640

 Score =  105 bits (251), Expect = 2e-23
 Identities = 48/84 (57%), Positives = 60/84 (71%)
 Frame = -2

Query: 488 FTEKGYDKFPICMAKTSNSLTGDPAIKGAPTDFTLKINGIFVSVGAGFVVPMVGEISKMP 309
           +T +G+ K PICMAKT  SL+ DP  KGAPT FTL I  +  SVGAGF+ P+VGE++ MP
Sbjct: 557 YTRQGFSKLPICMAKTHLSLSSDPTKKGAPTGFTLPIRDVRASVGAGFIYPLVGEMTTMP 616

Query: 308 GLPTRPSIYDIDLNTKTGEIEGLF 237
           GL TRP  YDI ++  T  I+GLF
Sbjct: 617 GLNTRPCFYDITIDPVTEIIDGLF 640


>U41552-1|AAC69101.2|  640|Caenorhabditis elegans Hypothetical
           protein K07E3.4b protein.
          Length = 640

 Score =  105 bits (251), Expect = 2e-23
 Identities = 48/84 (57%), Positives = 60/84 (71%)
 Frame = -2

Query: 488 FTEKGYDKFPICMAKTSNSLTGDPAIKGAPTDFTLKINGIFVSVGAGFVVPMVGEISKMP 309
           +T +G+ K PICMAKT  SL+ DP  KGAPT FTL I  +  SVGAGF+ P+VGE++ MP
Sbjct: 557 YTRQGFSKLPICMAKTHLSLSSDPTKKGAPTGFTLPIRDVRASVGAGFIYPLVGEMTTMP 616

Query: 308 GLPTRPSIYDIDLNTKTGEIEGLF 237
           GL TRP  YDI ++  T  I+GLF
Sbjct: 617 GLNTRPCFYDITIDPVTEIIDGLF 640


>Z73911-4|CAA98141.2|  625|Caenorhabditis elegans Hypothetical
           protein T12A7.1 protein.
          Length = 625

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 320 SKMPGLPTRPSIYDIDLNTKTGEIEGLF*VFTEFNN-LEFIHIFELLNSLHTTARITHRY 144
           +K+P   T  +++ +DLN ++  + G+  V   + + L+ + ++   N       + ++ 
Sbjct: 388 AKLPNHQTVSAVFPLDLNRQSSSVVGINGVMNAYRHALQNVTLYGPTNFSPIIVEVANKA 447

Query: 143 TKISPREA*YKIISI 99
            K+    A Y+I+ I
Sbjct: 448 QKMMKTTARYQILLI 462


>AC087078-5|AAK66024.2|  191|Caenorhabditis elegans Hypothetical
           protein Y34F4.5 protein.
          Length = 191

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 143 TKISPREA*YKIISIFYYTKLELYLIII 60
           TKI  R+   +I+S+FYY K    LI++
Sbjct: 84  TKIKKRQYSKEILSLFYYFKWFFLLIVV 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,796
Number of Sequences: 27780
Number of extensions: 252294
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)