Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F07f
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   1.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   3.4  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   5.9  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   5.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 69   KYITKIDNLCLIFIEYMYIFN 131
            KY+T     CL+  EYM+I+N
Sbjct: 1210 KYLTSYFESCLLSTEYMHIYN 1230


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 202 LLRRRRLPSGALYARRHALCH 264
           +L+RRR  +G+ +A  +A+CH
Sbjct: 499 VLQRRRWLNGSFFAAAYAICH 519


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 251 WRRAYSAP-DGKRRRLKRSISVIH 183
           W R++  P DGK ++LKR+++  H
Sbjct: 64  WYRSFLPPEDGKPQKLKRTLTARH 87


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 203 RSISVIHQANYEHLDFCFFFITINIKNIHIFY 108
           R  ++  Q+ +  L FCFFF+T  I  ++I +
Sbjct: 298 RFFAITIQSIHLGLWFCFFFLTACISALYILF 329


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -1

Query: 158 FCFFFITINIKNIHIFYKYKAEIIYLRNILRIEIVFYFF 42
           F  FF++ +     +F+  +  I+Y  +   +  +F+FF
Sbjct: 122 FLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,819
Number of Sequences: 5004
Number of extensions: 38136
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)