Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F07f
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540...    28   3.4  
03_06_0372 + 33446153-33446665,33446744-33446993,33447347-334475...    27   6.0  

>01_01_0699 +
           5405178-5405356,5405478-5405693,5405808-5405919,
           5406335-5406397,5406468-5406606,5406822-5406877,
           5408088-5408161,5408270-5408417,5408505-5408678,
           5408809-5408896,5408996-5409109,5409728-5409825,
           5409927-5410017,5410440-5410534,5410672-5410825,
           5410864-5410876,5411276-5411384
          Length = 640

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 426 DGRHNVT*SLRHEVGSLNAVLS*ISHSLYIQKW 328
           DGR N     + E+ S+ A L    H LY+++W
Sbjct: 218 DGRGNAVAHDKKELSSVVASLGGFEHGLYVERW 250


>03_06_0372 +
           33446153-33446665,33446744-33446993,33447347-33447501,
           33447593-33447805,33447926-33448113,33448282-33448540
          Length = 525

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 311 RVDLLYYEFILNLMTE*HRAWRRAYSAP-DGKRRRLKRSISVI 186
           R+ L + + + N  T     WRR + +P D +RRRL   +S +
Sbjct: 13  RLSLPFRDTVTNPSTPRIPPWRRQWISPTDARRRRLSMPVSAV 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,254
Number of Sequences: 37544
Number of extensions: 232528
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)