Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F07f
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   0.37 
SB_18108| Best HMM Match : HA (HMM E-Value=0.059)                      29   2.6  

>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 99  LIFIEYMYIFNIYSYKKKTKI*VFIIRLMYNGN*SFETTPLTVGCAVRSPPRSMSLCH 272
           +IF+E+M++    S      +  +++  +  G    +  P  VG +V S  RS+S CH
Sbjct: 134 VIFLEFMFLMGSVSIISTPIMLYWLLETLTGGGSWRDALPFAVGISVMSYVRSVSWCH 191


>SB_18108| Best HMM Match : HA (HMM E-Value=0.059)
          Length = 282

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 8   EKIHVLSILFVQKNKIRFLSEVYY 79
           EK+H LS + +Q+ KIR L E Y+
Sbjct: 77  EKVHALSEVKIQQQKIRRLKEKYF 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,992,947
Number of Sequences: 59808
Number of extensions: 273063
Number of successful extensions: 539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)