Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F07f
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    27   5.0  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    27   6.5  

>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 426 DGRHNVT*SLRHEVGSLNAVLS*ISHSLYIQKW 328
           DGR N   + + E+ S    L   S  LYI+KW
Sbjct: 237 DGRGNAVANNQDELSSAVTALGGFSRGLYIEKW 269


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 254 LYVTLSSNLI*THNTVGPPASVPPTHFCMYK 346
           LY++  +NL   H    PP+SV  T+ C ++
Sbjct: 24  LYISRIANLRRFHRRAFPPSSVASTNLCSFR 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,699,246
Number of Sequences: 28952
Number of extensions: 187807
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)