Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    31   0.10 
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    31   0.10 
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   1.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.2  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.8  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   9.0  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   9.0  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 145 LKNMPQQNV*ILETSFQKQKQETLQRKDASTVHATICSLWTACLVLKVTFY 297
           L N+ +  +  LE+  QK K++ LQ ++       IC       +LK+ FY
Sbjct: 93  LLNITENEIMSLESQLQKMKEQLLQLEERENTSEDICQSEENANMLKLNFY 143


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1077

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 339  LTRPGKAWSNFWGALNSAGFYARSADYMDIVYGV-IKGVWNVPFITNCYLLKMSLFRAPK 515
            +T+    ++  W        + + ADY D  YGV +       F T+  L+++SL R+PK
Sbjct: 873  ITKRPTHYNTSWDVAKFEVCHQKFADYSDFTYGVSVLNDCKYGFSTHGNLMRLSLLRSPK 932


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 509 RSEQRHLQQIAIGNEGHIPYSLYNS 435
           R + +HL++   G+ G+ PYSL NS
Sbjct: 179 RLQAKHLRRATSGSLGYNPYSLQNS 203


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/26 (30%), Positives = 22/26 (84%)
 Frame = -1

Query: 119  LILVIFYIIVYKQMNFILRIISINDL 42
            ++L+IF+I+V+  +  +++I+S+N++
Sbjct: 2182 ILLLIFFIVVWAVLLSVIKILSLNNV 2207


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 297 VKRYFQDETGCPQRTDSRMHC*C 229
           ++ +F D TG PQ  +   +C C
Sbjct: 468 IENFFSDGTGSPQSLEVSFYCLC 490


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 141 YSKEYASAKRINSGDFISEAEARNLAKERCINSACDYLFSVDSLSRLESNVLRYLLSSGY 320
           Y+KE  + KRI + D +  A  + + K    N+  D +      ++ ++N + ++    Y
Sbjct: 141 YAKELPNVKRILANDLLENA-VKTIEKNVNYNNVSDIVIP----NKGDANAVMHMNKFHY 195

Query: 321 DVI 329
           DVI
Sbjct: 196 DVI 198


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 333 PMLTRPGKAWSNFWGALNSAGFYARSADYMDIV 431
           P  TR   AW     A NSAG   RSA  +D++
Sbjct: 139 PRRTRLQTAWKE---ATNSAGLSLRSASALDVL 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,464
Number of Sequences: 5004
Number of extensions: 37055
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)