Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0208 + 10132435-10132558,10133657-10133904                       32   0.24 
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003     30   0.98 
06_03_0166 + 17408798-17408906,17409247-17409386                       27   9.1  

>05_03_0208 + 10132435-10132558,10133657-10133904
          Length = 123

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 398 LCEIRRLYGHSIWSYKGSMECA 463
           LC I RLY HS++ Y+G + CA
Sbjct: 98  LCHITRLYAHSLYLYRGFIICA 119


>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
          Length = 603

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 204 ARNLAKERCINSACDYLFSVDSLSRLESNV---LRYLLSSGYDVIAPMLTR 347
           A +L    C+ S  DYL +V  +   E NV   +R+L S  Y V +P+L R
Sbjct: 213 AESLGFHACVKSCLDYLEAVPWVGEEEDNVVSSIRHLQSKAYGV-SPLLKR 262


>06_03_0166 + 17408798-17408906,17409247-17409386
          Length = 82

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 195 EAEARNLAKERCINSACDYLFSVDSLSRLESNVLRYLLSSGYDVI 329
           E E  ++    C  S  D L S D   R +  +  YLL+ G+D +
Sbjct: 8   EEEGMSIQLRACQRSIEDALVSEDQRRRTDLAITTYLLAVGFDKV 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,489,305
Number of Sequences: 37544
Number of extensions: 231132
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)