Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57450.2 68418.m07178 DNA repair family protein contains simi...    33   0.15 
At5g57450.1 68418.m07177 DNA repair family protein contains simi...    33   0.15 
At3g28670.1 68416.m03578 expressed protein                             29   2.5  
At3g06670.1 68416.m00786 expressed protein                             29   2.5  
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ...    28   3.3  
At5g09540.1 68418.m01105 DNAJ heat shock N-terminal domain-conta...    28   3.3  
At4g39753.1 68417.m05629 kelch repeat-containing F-box family pr...    27   5.8  
At4g24910.1 68417.m03566 hypothetical protein contains Pfam prof...    27   7.7  
At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At5g57450.2 68418.m07178 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 25/59 (42%), Positives = 31/59 (52%)
 Frame = +3

Query: 234 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYARS 410
           N   D + + D LS L    LRYL SSG  V+ P L   G AW+N    +NS  F +RS
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN---CVNSRFFISRS 250


>At5g57450.1 68418.m07177 DNA repair family protein contains
           similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
           (X-ray repair cross-complementing protein 3) [Homo
           sapiens]
          Length = 304

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 25/59 (42%), Positives = 31/59 (52%)
 Frame = +3

Query: 234 NSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGALNSAGFYARS 410
           N   D + + D LS L    LRYL SSG  V+ P L   G AW+N    +NS  F +RS
Sbjct: 199 NQVTDLVETSDGLSGLRIGNLRYLYSSGRRVV-PSL---GLAWAN---CVNSRFFISRS 250


>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 183 DFISEAEARNLAKERCINSACDYLFSVD--SLSRLESNVLRYLLSSGYDVIAP 335
           D++   E+  + KERCI        S+D   +S +E+     +  S +DVI+P
Sbjct: 381 DYLQPFESLEVVKERCIELMSMEHSSIDESKISEVETETSLLIAESMWDVISP 433


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -1

Query: 221 LCKVSCFCF*NEVSRIYTFC*GIFFRVGSEKFLHLILVIFYIIVYKQMNFILRIISIND 45
           +C++ CFC   + SR  T C  +   V +EK LHL       +V   + F+  ++S++D
Sbjct: 494 ICELLCFCIMQDASR--TKCSFLQNNV-TEKVLHLTRRKEKYLVVAAIRFVRTLLSVHD 549


>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           EMBL:D86122
          Length = 915

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 391 AELRAPQKLDQALPGRVSIGAMT-S*PEESK*RKTLLSRRDRLSTEN 254
           A LR+PQ+L    PGR  +G+M  S    ++  + L  RR   S+ N
Sbjct: 677 AVLRSPQQLSHLFPGRSPMGSMPGSFDSPNERYRNLSHRRSESSSSN 723


>At5g09540.1 68418.m01105 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 280

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 121 WRNFSEPTLKNMPQQNV*ILETSFQKQKQETLQRKDASTV-HATICSLWTAC 273
           W   S+P  K++  + + + +T   ++ Q++  +  A T+ + T  S WTAC
Sbjct: 124 WYVLSDPPRKSIYDRELQLSQTGQSEKFQDSPLQSQAETLENPTATSFWTAC 175


>At4g39753.1 68417.m05629 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 390

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 396 FYARSADYMDIVYGVIKGVWNV 461
           FY RS D  D VY  I+  WNV
Sbjct: 245 FYVRSNDSKDSVYDPIREKWNV 266


>At4g24910.1 68417.m03566 hypothetical protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 315

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 402 HKIQQS*ELPRSWTRLCQDALASAR---*RHSQKRANNVKRYFQDET 271
           H + ++ E   SW  LCQ+ L SA+    +   KR +N  R+   ET
Sbjct: 265 HDVHRTAEKWLSWEFLCQENLVSAKGTFWKFRIKRQSNASRFCSPET 311


>At1g68930.1 68414.m07889 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 743

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 348 PGKAWSNFWGALNSAGFYARSADYMDIVYGVIKGVWNVPFITNCY 482
           PG++W  + G L+S      S+ Y+D +Y  ++ + N   I N Y
Sbjct: 609 PGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEEL-NNKIIDNGY 652


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,164,479
Number of Sequences: 28952
Number of extensions: 188735
Number of successful extensions: 608
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)