Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    49   4e-07
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    30   0.18 
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    30   0.24 
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   3.9  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   5.2  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.8  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   9.0  

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
 Frame = +3

Query: 183 MAGIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHT---D 353
           M+ ++ ++ L+   ++G   VIL+CAL  +K W+P       ++ P+P ++ ++++   D
Sbjct: 1   MSDLRKIIGLSSVLAVGFMLVILSCAL--FKNWYPL------LIAPLPNLLTKKYSTSHD 52

Query: 354 GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTI 521
                +   ++   F     + + FALPIV    G+I   A  ++  G  I++L I
Sbjct: 53  FLQEEDRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVI 108


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 399 ITMGFLVSSFALPIVLARAGVIFWGAC 479
           I +  L+S+FAL I   ++G  FWGAC
Sbjct: 177 IAITLLMSTFALWIKAVKSGSSFWGAC 203


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
 Frame = +3

Query: 297 VLFYILCPIPTMIARRHTDGAGGSNSACM--ETAVFITMGFLVSSFALPIVLARAGVIFW 470
           +L YI+CP+ T+++  +        S  +  +  V + + F +S   +P V      +F+
Sbjct: 21  ILLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLIDYLFF 80

Query: 471 GACY-LTLAGNVIVYLTI 521
              + L++  +++VYL+I
Sbjct: 81  SPPFSLSIGPSLLVYLSI 98


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  KTKQIIYYLLAEVYFISGVFKQEENNY 163
           KT   +YY  A+V F+SG F +  ++Y
Sbjct: 412 KTDSDLYYHRAQVRFVSGEFAEAISDY 438


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
 Frame = +2

Query: 194 KRFGVVGIRGFNWNDI---CHTSLCLTTIQTMVAILRCAILHSVP--NTYDDR*EAY*WC 358
           KR    G RGF   ++   C        + ++  IL C + H  P     DD        
Sbjct: 257 KRADRAGTRGFRAPEVLFRCQNQTSSIDVWSVGVILLCFLTHRYPFFRCEDDIDAIVELA 316

Query: 359 WRFKFRLYGNCSIYHNGIFSQLFCATDSSRQGWCDFL 469
             F      NC++ H  I+S         +  W D +
Sbjct: 317 HIFGRNGMSNCALLHGQIWSDNIPTLLDQKHNWLDLI 353


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 282 WPFFVVLFYILC-PIPTMIARRHTDGAGGSNSACMETAVFI 401
           +PF+ VLFY  C P+    A  H       +S+CM+   ++
Sbjct: 523 YPFYEVLFYDYCRPLNQAFASGHQRSV--IHSSCMDPEYYV 561


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 107 LLAEVYFISGVFKQEENNYT*NIKHNGWNKRFG 205
           ++A   F+S   K E N++  +     W +RFG
Sbjct: 166 MMAAAKFLSQYIKDESNSFVISSDFCHWGRRFG 198


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 380 YGNCSIYHNGIFSQLFCATDSSRQG 454
           YG  ++Y  GI  Q  C  D  R+G
Sbjct: 245 YGETNLYLLGITGQFDCRVDLDREG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,009
Number of Sequences: 5004
Number of extensions: 43776
Number of successful extensions: 68
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)