Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1124 - 34279570-34279765,34280074-34280158,34280236-342802...    63   1e-10
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164...    48   5e-06
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    33   0.14 
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    32   0.24 
01_01_0795 - 6187518-6188219                                           27   9.1  

>02_05_1124 -
           34279570-34279765,34280074-34280158,34280236-34280275,
           34280371-34280460
          Length = 136

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
 Frame = +3

Query: 201 LVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHTDGAGGSNSA- 377
           L  LA   S G+   ILACAL  Y  WWP   VL Y++ P+P +        +  SN   
Sbjct: 14  LALLAILVSGGIVLQILACAL--YNNWWPMLTVLMYLILPMPLIFFLGSNSPSMMSNDGD 71

Query: 378 -CMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTI 521
             +    F+T   +V S A+P +L  AGVI WGA  + L+  ++  + I
Sbjct: 72  TWVSFTKFLTGASIVGSIAIPSILKHAGVIGWGALTMELSSFLVFGVAI 120


>01_07_0303 +
           42615578-42615709,42616273-42616312,42616393-42616477,
           42616634-42616813,42618274-42618354,42618890-42619011,
           42619867-42620723,42621656-42621897,42622107-42622200,
           42622306-42622476,42622695-42622740,42624101-42624111,
           42624141-42624392
          Length = 770

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = +3

Query: 252 ACALPQYKLWWPFFVVLFYILCPIPTMIARRHTDG--AGGSNSACMETAVFITMGFLVSS 425
           ACAL  Y  WWP    L Y+L P+P +     +               A F+T    + S
Sbjct: 45  ACAL--YNNWWPMLAALMYVLVPMPCLFFGGGSTQFLTSRDGGGWFNAAKFLTGASAMGS 102

Query: 426 FALPIVLARAGVIFWGACYLTLAGNVIVYLTI 521
            A+P +L  AG+I  GA ++      I+  T+
Sbjct: 103 IAIPAILRHAGLIETGAMFIEFTSFFILVCTV 134


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 210 LAFAGSIGMTFV-ILACALPQYKLWWPFFVVLFYILCP 320
           LAF+G +G+TF+ ++A  +  +++ W ++VV+ Y+L P
Sbjct: 434 LAFSGYLGLTFIAVIAIPMMFHEMKW-YYVVIAYLLAP 470


>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 264 PQYKLWWPFFVVLFYILCPIPTMIARRHTDGAGGSNSACMETAVFITMGFL 416
           P Y+   P    LF++  PI   +ARR    + G N A + T +F  +GFL
Sbjct: 165 PFYRKPTPAMGGLFFV--PIGIFVARRQVGSSTGVNGAAIITLIFAMVGFL 213


>01_01_0795 - 6187518-6188219
          Length = 233

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 354 GAGGSNSACMETAVFITMGFLVSSFALPIVL 446
           G GG NS C  T      G L +SFAL   L
Sbjct: 19  GGGGGNSGCCSTTTL--FGALAASFALSFFL 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,379
Number of Sequences: 37544
Number of extensions: 276452
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)