Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306F02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011) 32 0.33
SB_27035| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6) 28 4.1
SB_39906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10) 27 7.1
SB_26911| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.1
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) 27 7.1
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17) 27 9.4
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 27 9.4
>SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)
Length = 318
Score = 31.9 bits (69), Expect = 0.33
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 186 AGIKGLVSLAFAGSIGM-TFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHTDGAG 362
A +K L L F +G+ T + ACA P + F +V Y+ I+ TD
Sbjct: 76 AFLKSLKLLRFNRRMGLLTSTVKACAAPLASFFVMFLIV--YLAYVQFAFISFGSTDQNY 133
Query: 363 GSNSACMETAVFITMG 410
GS ++CM T + +T+G
Sbjct: 134 GSFASCMSTMLSMTLG 149
>SB_27035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 478 HAPQKITPALARTIGSAKELTKNPIVINTAVSIQAEFEPPAPSV 347
H+ + P RTIG +++ + ++ + +Q EF PP P V
Sbjct: 19 HSYRSPEPLGIRTIGVREQMMREELMKQVSEEVQQEFNPPPPEV 62
>SB_6262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 189 GIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCP 320
G+ + +F+GS+ FV L ++P Y++ W VV+ L P
Sbjct: 40 GLAFAILASFSGSVMALFVKLTISMPSYEVVWFRSVVVGVFLLP 83
>SB_11686| Best HMM Match : DUF565 (HMM E-Value=4.6)
Length = 365
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 231 GMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIAR 341
G F L P++ WW F L ++ CP P I R
Sbjct: 159 GPKFARLDSRRPEFSSWWIEFSELTHMECPQPDKIKR 195
>SB_39906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 239 ICHTSLCLTTIQTMVAILRCAILH 310
ICH+ LTT +V ILR ++H
Sbjct: 40 ICHSPFALTTFSEIVKILRTPLVH 63
>SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10)
Length = 189
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 494 GQCKVTCTPKNHTSPGEN 441
G VTC P+N PGEN
Sbjct: 144 GVMHVTCVPQNRAGPGEN 161
>SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 349
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -2
Query: 451 LARTIGSAKELTKNPIVINTAVSIQAEFEPPAPSVCLLAIIVGIGH 314
LA I K L K+ V N ++ F PAPS C I G GH
Sbjct: 202 LAHDIALLK-LEKSATVNNNVHTVCLPFNGPAPSDCTHCWITGWGH 246
>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
Length = 486
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 2 NLSSKHSTFIQATKLLLCDG*LIKVKGKTKQIIYYLLAEVYFISGVFKQEENN 160
N S T KLL+C L+ +GK K++I L E Y S V K+ + N
Sbjct: 375 NSSGSQPTIPLQQKLLVCTLLLMLKQGKVKEVILGKLHETY--SNVCKKRQVN 425
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 349 VCLLAIIVGIGHRM*NSTTKNGHHSLYC 266
V ++ VG+G R+ NS+T N H +YC
Sbjct: 1018 VAVVLFFVGLGLRL-NSSTFNAGHIIYC 1044
>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
Length = 1470
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 463 ITPALARTIGSAKELTKNPIVINTAVSIQAEFEPPAPSV 347
ITPA G+A L + + ++T+ S+ +PP V
Sbjct: 1373 ITPAKCAQCGNASRLNSDALSVSTSPSLGTVIQPPVKIV 1411
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -1
Query: 521 DRQIYDHVTGQCKVTCTPKNHTSPGENYR*RKRAD*KSHCDKY-CSFH 381
D ++ HV+G + H+S E A+ K H D+Y C H
Sbjct: 243 DEEVASHVSGDDIMDVNDLIHSSQSEAVHRNVHAEDKGHIDEYGCGLH 290
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,917
Number of Sequences: 59808
Number of extensions: 324945
Number of successful extensions: 827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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