Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 519 SSDIRSRYRPV*GNMHPKKSHQPW 448
           + D   RY PV  N   +  H+PW
Sbjct: 442 NGDYIRRYLPVLKNFPTRYIHEPW 465


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 512 IYDHVTGQCKVTCTPKNHTS 453
           IY H T +CK+     +HT+
Sbjct: 169 IYPHDTQECKLQMESLSHTT 188


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 198 GLVSLAFAGSIGMTFVILACALPQYKLWW 284
           G+V +A   S  +  V  AC  P+Y+ W+
Sbjct: 245 GVVHVAQDESTSLVCVAQACPTPEYR-WY 272


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 198 GLVSLAFAGSIGMTFVILACALPQYKLWW 284
           G+V +A   S  +  V  AC  P+Y+ W+
Sbjct: 245 GVVHVAQDESTSLVCVAQACPTPEYR-WY 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,328
Number of Sequences: 438
Number of extensions: 3331
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)