Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    31   0.14 
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    30   0.18 
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    27   1.7  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    27   2.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   5.2  

>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 208 YMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPR-AHYPRRRSDY 384
           Y  +   D+   + TYG +NN   + +S  YG + G S  YG  G      +Y    S+ 
Sbjct: 43  YSSNSYNDNNNSNSTYGSSNNYGNYGSSNNYG-SYGASNTYGSNGSSNNYGNYGATNSNG 101

Query: 385 DSNF*IS 405
           D+ + I+
Sbjct: 102 DAGYSIT 108


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 472 TRIKTLRVYCQSFVKSQLAIFL 407
           T  K LR++C+   KSQLA+FL
Sbjct: 366 TNAKHLRIFCERLTKSQLAMFL 387


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 277 HNHCSLDHKFVIPDPNLAYNAAYISVIAASTPIAKS 170
           H H    H F IPDP LA+    + V+   T  A++
Sbjct: 315 HVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQA 350


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
 Frame = +1

Query: 220 YTPDSGRGSQTYG------PTNNGYGFSASQIYGQTGG 315
           Y+   GRG   YG      PTN+  G+S+   Y   GG
Sbjct: 578 YSGRGGRGGNAYGARDFRRPTNSSSGYSSGPSYSGYGG 615


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +1

Query: 220 YTPDSGRGSQTYGPTNNG---YGFSASQIYGQTGGGSQIYGYTGEY 348
           Y P S   +  Y     G   Y FS S   G +G G+ + G +G +
Sbjct: 135 YDPSSDSLANVYNSVPYGSSPYDFSNSSFVGNSGSGTPLDGDSGSF 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,150
Number of Sequences: 5004
Number of extensions: 45253
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)