Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.015
SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             30   1.3  
SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)                     30   1.3  
SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)               29   1.8  
SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     29   2.3  
SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)      28   5.4  
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)                   27   9.4  

>SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 193 PQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYT 339
           P ++KY+  +   +  GS  YG T  G  F  S  YG T  G   YG T
Sbjct: 222 PNIKKYVDEFVVSTFYGSTFYGSTFYGSTFYGSTFYGSTFYGPTFYGST 270


>SB_42660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 25/73 (34%), Positives = 32/73 (43%)
 Frame = +1

Query: 145 QLAYPNPGDSWRSEWTPQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQ 324
           QL     G  ++   T    +Y Q YTP SG   Q + PT+     S  Q+Y  T G   
Sbjct: 167 QLYKTTSGSRYQLYKTTSGSRY-QLYTPTSGSRCQLHTPTSG----SRCQLYTPTSGSRS 221

Query: 325 IYGYTGEYPRAHY 363
           +Y Y GE   A Y
Sbjct: 222 LYTYFGESLSALY 234



 Score = 32.7 bits (71), Expect = 0.19
 Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
 Frame = +1

Query: 76  HQLKERDLPYLPSGKRMSTAFIEQLAYPNPGDSWRSEWTPQLQKYMQHYTPDSGRGSQTY 255
           H  KE    Y PS  R S   +E   Y     S    +TP  +   Q YTP SG   Q Y
Sbjct: 112 HAYKEVRRQY-PSSLRYSYT-LEAKLYKTTSGSRYQLYTPTFEIRYQLYTPTSGNRYQLY 169

Query: 256 GPTNNGYGFSASQIYGQTGGGS-QIYGYT-GEYPRAHYP 366
             T+     S  Q+Y  T G   Q+Y  T G   + H P
Sbjct: 170 KTTSG----SRYQLYKTTSGSRYQLYTPTSGSRCQLHTP 204



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
 Frame = +1

Query: 187 WTPQLQKYMQHYTPDSGRGSQTYGPTNNG------YGFSASQIYGQTGGG-SQIYGYTGE 345
           +TP      Q +TP SG   Q Y PT+        +G S S +Y   G   S +Y Y GE
Sbjct: 191 YTPTSGSRCQLHTPTSGSRCQLYTPTSGSRSLYTYFGESLSALYTYFGESLSALYTYLGE 250


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 209 YFCNCGVHSDRQESPGFG-YANCSMKAVDIRFPDG 108
           ++C+ G H+ R  +P  G Y N + +AV +  P G
Sbjct: 306 FYCHAGSHTPRPANPALGSYQNATQQAVCLTCPKG 340


>SB_12852| Best HMM Match : Mic1 (HMM E-Value=0.32)
          Length = 1077

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -2

Query: 508  YLYSVN*NRSKRTRIKTLRVYCQSFVKSQLAIFLK 404
            +LYS N  + + +R++TLR+   + V+ +L ++LK
Sbjct: 952  FLYSRNNRKGRNSRLRTLRLATLTTVRIELVLYLK 986


>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
          Length = 910

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 239 RPESGV*CCIYFCNCGVHSDRQESPGFGYANCSM 138
           RP SGV CC+ FC    H D+Q   G     C++
Sbjct: 62  RPFSGVTCCMDFC-AHSHRDKQNMDGGATVVCTL 94


>SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 162 PW*LLAIGVDAAITEIYAALYARFGSGITNLWSN 263
           PW  + +G   +I E+   + AR G G+  LWSN
Sbjct: 201 PWWQVDLGTTKSIAEVL--IVARGGGGVERLWSN 232


>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 327 YLGSASCLSIYLGSTESITIVRWTISL*SPTRIWRIMLHI 208
           YL +   LS+   +  S++I+  T+ L +PT  W+ + HI
Sbjct: 43  YLAAGGSLSLNADAGGSLSIIDRTLHLKNPTSEWQTLTHI 82


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +1

Query: 154 YPNPGDSWRSEWTPQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIY- 330
           YP PG    + + PQ   Y     P  G   Q         G+   Q Y  TG   Q   
Sbjct: 147 YPPPGGYPPTSYPPQ--PYPAQPYPQQGYPPQPPPQAYPQPGYPP-QGYPPTGPYPQTQP 203

Query: 331 GYTGEYPRAHYPRR 372
           GY G  P+AHYP++
Sbjct: 204 GYAGATPQAHYPQQ 217


>SB_52254| Best HMM Match : ANF_receptor (HMM E-Value=7.84727e-44)
          Length = 933

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 187 WTPQLQKYMQHYTPDSGRGSQTYGPTNNGY 276
           WT Q +KY+ H    S  G+   G  N+GY
Sbjct: 319 WTEQYKKYIAHVCNGSAAGTCHTGIHNDGY 348


>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
 Frame = +1

Query: 1   KAPIPLSEEMLRDLDKSHMG--GFDDMHQLKERDLPYLPSGKRMSTAFI-----EQLAYP 159
           +A I   E+ L + +K  +     D M +LK+R +  L   K+  TAFI     E+ ++P
Sbjct: 435 EAEIVEFEDQLSEGEKEFLNVQAKDKMKELKQRKMKLLNFPKKPGTAFIYFLTMERESFP 494

Query: 160 NPGDSWRSEWTPQLQKYMQHYTPD 231
                  ++WT ++ +  +  + D
Sbjct: 495 RREGEGITQWTQRMAETWRDMSDD 518


>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
          Length = 487

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +1

Query: 241 GSQTYGPTNNGYGFSASQIYGQ---TGGGSQIYGYTGEYPRAHYPRR 372
           GSQT G     Y  S + +YG    T  GS+   Y G    +H P R
Sbjct: 212 GSQTPGSQTPSYAASRTPMYGSQTPTHDGSRTPHYGGSMTPSHDPSR 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,855,739
Number of Sequences: 59808
Number of extensions: 337166
Number of successful extensions: 955
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)