Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306F01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical pr... 32 0.29
AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical ... 32 0.29
AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical ... 32 0.29
AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical ... 32 0.29
Z73969-13|CAE17698.1| 73|Caenorhabditis elegans Hypothetical p... 30 0.87
Z73969-10|CAE17695.1| 73|Caenorhabditis elegans Hypothetical p... 30 0.87
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 30 1.2
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 30 1.2
Z73969-17|CAI79127.1| 111|Caenorhabditis elegans Hypothetical p... 29 1.5
L12018-6|AAA65461.1| 63|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z73969-12|CAE17697.1| 73|Caenorhabditis elegans Hypothetical p... 29 2.0
Z73969-5|CAA98231.1| 178|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z71186-5|CAD56578.1| 101|Caenorhabditis elegans Hypothetical pr... 29 2.0
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 2.0
Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical pr... 29 2.7
AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein. 29 2.7
AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical... 28 3.5
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 27 6.2
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 27 6.2
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 27 6.2
L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z73969-18|CAI79128.1| 73|Caenorhabditis elegans Hypothetical p... 27 8.1
U42991-1|AAA85197.1| 118|Caenorhabditis elegans RNA binding pro... 27 8.1
U24124-1|AAA77029.1| 118|Caenorhabditis elegans RRM-type RNA bi... 27 8.1
AF099920-2|AAL32226.2| 437|Caenorhabditis elegans Hypothetical ... 27 8.1
AF038614-8|AAB92055.1| 118|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z50858-6|CAD44135.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 193 PQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGS-QIYGYTGEYPRAHYPR 369
P +++ P G Q+ P +NG GF+ S +Y S + + + P PR
Sbjct: 170 PSFPQFLNSNHPTPGSYVQSISPDSNGQGFAQSNLYNALNVSSDESINGSDDIPNRKRPR 229
Query: 370 RRSDYDSNF 396
+ D +F
Sbjct: 230 MDQNMDPSF 238
>AL021567-6|CAD44122.1| 949|Caenorhabditis elegans Hypothetical
protein F21A10.2c protein.
Length = 949
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 193 PQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGS-QIYGYTGEYPRAHYPR 369
P +++ P G Q+ P +NG GF+ S +Y S + + + P PR
Sbjct: 170 PSFPQFLNSNHPTPGSYVQSISPDSNGQGFAQSNLYNALNVSSDESINGSDDIPNRKRPR 229
Query: 370 RRSDYDSNF 396
+ D +F
Sbjct: 230 MDQNMDPSF 238
>AL021567-2|CAD44121.1| 947|Caenorhabditis elegans Hypothetical
protein F21A10.2b protein.
Length = 947
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 193 PQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGS-QIYGYTGEYPRAHYPR 369
P +++ P G Q+ P +NG GF+ S +Y S + + + P PR
Sbjct: 168 PSFPQFLNSNHPTPGSYVQSISPDSNGQGFAQSNLYNALNVSSDESINGSDDIPNRKRPR 227
Query: 370 RRSDYDSNF 396
+ D +F
Sbjct: 228 MDQNMDPSF 236
>AL021567-1|CAA16508.2| 898|Caenorhabditis elegans Hypothetical
protein F21A10.2a protein.
Length = 898
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 193 PQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGS-QIYGYTGEYPRAHYPR 369
P +++ P G Q+ P +NG GF+ S +Y S + + + P PR
Sbjct: 119 PSFPQFLNSNHPTPGSYVQSISPDSNGQGFAQSNLYNALNVSSDESINGSDDIPNRKRPR 178
Query: 370 RRSDYDSNF 396
+ D +F
Sbjct: 179 MDQNMDPSF 187
>Z73969-13|CAE17698.1| 73|Caenorhabditis elegans Hypothetical
protein C12D8.17 protein.
Length = 73
Score = 30.3 bits (65), Expect = 0.87
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGE 345
G S Y GYG+ A + YG G GS GY G+
Sbjct: 27 GYASSYYPSYYGGYGYGAYRAYGGYGLGSAYAGYYGK 63
>Z73969-10|CAE17695.1| 73|Caenorhabditis elegans Hypothetical
protein C12D8.14 protein.
Length = 73
Score = 30.3 bits (65), Expect = 0.87
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGE 345
G S Y GYG+ A+ YG G GS GY G+
Sbjct: 27 GYASSYYPSYYGGYGYGANGAYGGYGLGSAYAGYYGK 63
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 226 PDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDYDSN 393
PDS R S T P+ N S+SQ YG G G+++ E + S Y N
Sbjct: 4 PDSYRSSITSRPSFNRTVTSSSQNYGAPGSGNRVLKIVTETHSSSVSSGLSPYGQN 59
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 226 PDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDYDSN 393
PDS R S T P+ N S+SQ YG G G+++ E + S Y N
Sbjct: 4 PDSYRSSITSRPSFNRTVTSSSQNYGAPGSGNRVLKIVTETHSSSVSSGLSPYGQN 59
>Z73969-17|CAI79127.1| 111|Caenorhabditis elegans Hypothetical
protein C12D8.18 protein.
Length = 111
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGE 345
G S Y GYG+ A YG G GS GY G+
Sbjct: 65 GYASSYYPSYYGGYGYGAYGAYGGYGFGSAYAGYYGK 101
>L12018-6|AAA65461.1| 63|Caenorhabditis elegans Hypothetical
protein F22B7.4 protein.
Length = 63
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +1
Query: 223 TPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTG 342
T SG YG NNGYG YG GG GY G
Sbjct: 26 TYSSGYDYDCYGYGNNGYGNGG---YGYGNGGGYYGGYNG 62
>Z73969-12|CAE17697.1| 73|Caenorhabditis elegans Hypothetical
protein C12D8.16 protein.
Length = 73
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGE 345
G S Y GYG+ A YG G GS GY G+
Sbjct: 27 GYASSYYPSYYGGYGYGAYGAYGGYGLGSAYAGYYGK 63
>Z73969-5|CAA98231.1| 178|Caenorhabditis elegans Hypothetical
protein C12D8.6 protein.
Length = 178
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGE 345
G S Y GYG+ A YG G GS GY G+
Sbjct: 132 GYASSYYPSYYGGYGYGAYGAYGGYGLGSAYAGYYGK 168
>Z71186-5|CAD56578.1| 101|Caenorhabditis elegans Hypothetical
protein F23D12.6 protein.
Length = 101
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGE 345
G S Y GYG+ A YG G GS GY G+
Sbjct: 55 GYASSYYPSYYGGYGYGAYGAYGGYGLGSAYAGYYGK 91
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 220 YTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDYDS 390
Y+ G + G T +G SA G G G Q + +G Y ++H+ S++ S
Sbjct: 448 YSISGNVGGISVGGTIGSHGASAHATGGIIGSGVQAHRGSGTYQQSHHSYSSSNHSS 504
>Z50797-7|CAD27609.1| 195|Caenorhabditis elegans Hypothetical
protein T22H6.7 protein.
Length = 195
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +1
Query: 214 QHYTPDSGRGSQT--YGPTN---NGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRS 378
Q+Y SG T YG N NGY + Y G + GY G+ P Y S
Sbjct: 89 QYYAGGSGGEMATPNYGNNNGYNNGYNNGNNMRYNDNNGYNTNNGYRGQ-PTPGYGNSNS 147
Query: 379 DYDSN 393
+++SN
Sbjct: 148 NFNSN 152
>AB086410-1|BAC44993.1| 195|Caenorhabditis elegans ABF-6 protein.
Length = 195
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +1
Query: 214 QHYTPDSGRGSQT--YGPTN---NGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRS 378
Q+Y SG T YG N NGY + Y G + GY G+ P Y S
Sbjct: 89 QYYAGGSGGEMATPNYGNNNGYNNGYNNGNNMRYNDNNGYNTNNGYRGQ-PTPGYGNSNS 147
Query: 379 DYDSN 393
+++SN
Sbjct: 148 NFNSN 152
>AL110485-29|CAB60376.3| 732|Caenorhabditis elegans Hypothetical
protein Y46G5A.10 protein.
Length = 732
Score = 28.3 bits (60), Expect = 3.5
Identities = 25/72 (34%), Positives = 32/72 (44%)
Frame = +1
Query: 34 RDLDKSHMGGFDDMHQLKERDLPYLPSGKRMSTAFIEQLAYPNPGDSWRSEWTPQLQKYM 213
R DKS F HQ +E DLPY T I + P+ DS RSE TP ++
Sbjct: 535 RFADKSQQNRFPGDHQAREEDLPY--------TRGISKT--PSNQDS-RSERTPCSDIHI 583
Query: 214 QHYTPDSGRGSQ 249
+ P+ R Q
Sbjct: 584 PYNNPEKERAYQ 595
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTG 342
GRG +G G F S +G +GGG G G
Sbjct: 824 GRGGGVFGGGGRGGDFGGSGNFGGSGGGGSFGGSGG 859
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 220 YTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDY 384
Y+ G + G T +G SA G G G Q + +G Y ++H+ S++
Sbjct: 1074 YSISGNVGGISVGGTIGSHGASAHATGGIIGSGVQAHRGSGTYQQSHHSYSSSNH 1128
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.5 bits (58), Expect = 6.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 323 WDPPPVCPYIWEAL 282
W PPP PY+W L
Sbjct: 586 WQPPPERPYVWPTL 599
>L16685-3|AAA28169.3| 321|Caenorhabditis elegans Hypothetical
protein ZC21.3 protein.
Length = 321
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Frame = +1
Query: 196 QLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQT---GGGSQIYGY-TGEYPRAHY 363
Q Q Q P +Q Y P Y Q YG T G +Y T YP +
Sbjct: 13 QQQYNSQQQQPQQQYNTQQYNPQQQQYNPQQQQQYGTTSFSSNGQAMYQTGTTNYPTLYQ 72
Query: 364 PRRRSDYDSN 393
P S SN
Sbjct: 73 PSSSSPQYSN 82
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
protein C27A7.4 protein.
Length = 1403
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 85 KERDLPYLPSGKRMSTAFIEQLAYPNPGDSWRSEWT 192
K+ + ++P G +S +E +PN G W + T
Sbjct: 66 KDGGVCFIPKGGNVSHTVVETYPFPNQGVDWSHDGT 101
>Z73969-18|CAI79128.1| 73|Caenorhabditis elegans Hypothetical
protein C12D8.19 protein.
Length = 73
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGE 345
G S Y GYG+ A YG G GS GY G+
Sbjct: 27 GYVSSYYPSYYAGYGYGAYGTYGGYGLGSAYAGYYGK 63
>U42991-1|AAA85197.1| 118|Caenorhabditis elegans RNA binding
protein protein.
Length = 118
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDY 384
G G YG GYG YGQ GG Q GY G + +Y ++ Y
Sbjct: 46 GYGGNGYG-NRGGYGQQGGY-YGQQGGYGQQGGYGGN--QGYYGQQGGGY 91
>U24124-1|AAA77029.1| 118|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 118
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDY 384
G G YG GYG YGQ GG Q GY G + +Y ++ Y
Sbjct: 46 GYGGNGYG-NRGGYGQQGGY-YGQQGGYGQQGGYGGN--QGYYGQQGGGY 91
>AF099920-2|AAL32226.2| 437|Caenorhabditis elegans Hypothetical
protein H06H21.6 protein.
Length = 437
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 505 LYSVN*NRSKRTRIKTLRVYCQSFVK 428
LYS+N K T I+T+ YCQ+ ++
Sbjct: 169 LYSLNKKHPKETAIETICKYCQNILE 194
>AF038614-8|AAB92055.1| 118|Caenorhabditis elegans Hypothetical
protein F15E6.3 protein.
Length = 118
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 235 GRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYPRRRSDY 384
G G YG GYG YGQ GG Q GY G + +Y ++ Y
Sbjct: 46 GYGGNGYG-NRGGYGQQGGY-YGQQGGYGQQGGYGGN--QGYYGQQGGGY 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,796,652
Number of Sequences: 27780
Number of extensions: 258746
Number of successful extensions: 775
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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