Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306F01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
 Frame = +1

Query: 187  WTPQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYP 366
            W+P L +           G +    +N  Y FS+    G+ GG       TG  P   Y 
Sbjct: 1027 WSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAE--LRLTGLRPYTKYT 1084

Query: 367  RRRSDYDSNF*ISL-EILLTET*QNFDNIP 453
                 Y+      L E LLT+T ++  +IP
Sbjct: 1085 LVVQAYNQVGSGPLSEPLLTQTMEDVPSIP 1114



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 313  GGSQIYGYTGEYPRAH 360
            GG+ + GYT  Y  AH
Sbjct: 1430 GGASLTGYTLHYRTAH 1445


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
 Frame = +1

Query: 187  WTPQLQKYMQHYTPDSGRGSQTYGPTNNGYGFSASQIYGQTGGGSQIYGYTGEYPRAHYP 366
            W+P L +           G +    +N  Y FS+    G+ GG       TG  P   Y 
Sbjct: 1023 WSPPLPELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAE--LRLTGLRPYTKYT 1080

Query: 367  RRRSDYDSNF*ISL-EILLTET*QNFDNIP 453
                 Y+      L E LLT+T ++  +IP
Sbjct: 1081 LVVQAYNQVGSGPLSEPLLTQTMEDVPSIP 1110



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 313  GGSQIYGYTGEYPRAH 360
            GG+ + GYT  Y  AH
Sbjct: 1426 GGASLTGYTLHYRTAH 1441


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 265 NNGYGFSASQIYGQTGGGSQIYG 333
           N  YG    Q  GQT   SQ+ G
Sbjct: 893 NVPYGMQRGQSGGQTWSNSQVQG 915


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 352 RAHYPRRRSDYDS 390
           R + P +RSDYDS
Sbjct: 357 RYNTPSKRSDYDS 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,603
Number of Sequences: 438
Number of extensions: 3367
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)