Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E12f
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...    84   9e-18
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...    84   9e-18
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   3.4  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.8  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   7.8  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    25   7.8  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 39/79 (49%), Positives = 52/79 (65%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KR+GTA ARMP   +W              R + KID+HLYH+LY++AKGN FK+KR L+
Sbjct: 80  KRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALI 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           E+I R KAE  RTK++ +Q
Sbjct: 140 EHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 39/79 (49%), Positives = 52/79 (65%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KR+GTA ARMP   +W              R + KID+HLYH+LY++AKGN FK+KR L+
Sbjct: 80  KRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALI 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           E+I R KAE  RTK++ +Q
Sbjct: 140 EHIQRAKAEANRTKLIQEQ 158


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 219 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 311
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 80  FVFSSEGLQQFLLLGGNTFLAALACLLHFIAA 175
           +V   E   +FLLLG   F  A + LLH +++
Sbjct: 50  YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSS 81


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 140 AALACLLHFIAAGLSLVAKHLRPGLLSLLP 229
           A L CLL  IAA   L+  H+ P L  LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 179 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 289
           LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 77  GFVFSSEGLQQFLLLGGNTFLAA 145
           G VFS + L +F+  GGN F+ A
Sbjct: 83  GPVFSPKSLLEFVQSGGNLFVVA 105


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = +2

Query: 110 FLLLGGNT-----FLAALACLLHFIAAGL 181
           F+  GGN      FL A  C+L+ I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,593,004
Number of Sequences: 5004
Number of extensions: 28760
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)