Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E12f
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...    99   9e-22
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...    99   9e-22
07_03_1639 + 28305801-28305958,28306240-28306249                       33   0.12 
03_02_0050 + 5272471-5274861                                           31   0.64 
02_05_0067 + 25557975-25558553                                         27   6.0  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =   99 bits (238), Expect = 9e-22
 Identities = 48/79 (60%), Positives = 54/79 (68%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KRRGT  AR+P K LW              R AKKID+H+YH +YMK KGN+FKNKRVLM
Sbjct: 80  KRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLM 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           E IH+ KAEKAR K LSDQ
Sbjct: 140 ESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =   99 bits (238), Expect = 9e-22
 Identities = 48/79 (60%), Positives = 54/79 (68%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KRRGT  AR+P K LW              R AKKID+H+YH +YMK KGN+FKNKRVLM
Sbjct: 80  KRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLM 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           E IH+ KAEKAR K LSDQ
Sbjct: 140 ESIHKSKAEKAREKTLSDQ 158


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -3

Query: 286 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 185
           MK KGN+  NKR       + +AEKAR + LSDQ
Sbjct: 1   MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 113 LLLGGNTFLAALACLLHFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 271
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H  +L H+
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132


>02_05_0067 + 25557975-25558553
          Length = 192

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 250 HACS*THYPSPSCRVSGIDACQSSW 324
           H C   H   P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,113
Number of Sequences: 37544
Number of extensions: 214009
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)