Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E12f
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              121   3e-28
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   3.5  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   3.5  
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                        27   8.0  
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                        27   8.0  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  121 bits (292), Expect = 3e-28
 Identities = 61/116 (52%), Positives = 73/116 (62%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KR+GTANARMPQK +W              R AKKID H+YHSLYMK+KGNVFKNKRVLM
Sbjct: 108 KRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLM 167

Query: 241 EYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXELLQTFAREDEAA 74
           EYIH+KKAEKAR+K+LSDQ                        ++L  +A+E+EAA
Sbjct: 168 EYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDMLSAYAKEEEAA 223


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 110 FLLLGGNTFLAALAC 154
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 126 PPRRRNCCRPSLEKTKPRLPLRSK 55
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 280 AKGNVFKNKRVLMEYIHRKK 221
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 280 AKGNVFKNKRVLMEYIHRKK 221
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,451,503
Number of Sequences: 59808
Number of extensions: 227961
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)