Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E12f
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...    96   1e-20
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.43 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   3.1  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   5.3  
U41531-4|AAR85902.1|  578|Caenorhabditis elegans Guanylyl cyclas...    27   9.3  
U41531-3|AAR85901.1|  702|Caenorhabditis elegans Guanylyl cyclas...    27   9.3  
U41531-2|AAR85900.1|  594|Caenorhabditis elegans Guanylyl cyclas...    27   9.3  
AY275184-1|AAP32292.1|  594|Caenorhabditis elegans soluble guany...    27   9.3  
AY275183-1|AAP32291.1|  578|Caenorhabditis elegans soluble guany...    27   9.3  
AY275182-1|AAP32290.1|  702|Caenorhabditis elegans soluble guany...    27   9.3  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 45/79 (56%), Positives = 54/79 (68%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KRRGTANARMP+K LW              R AKK+D+HLYH LY++AKGN FKNK+ L+
Sbjct: 80  KRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLI 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           EYI +KK E  R K L+DQ
Sbjct: 140 EYIFKKKTENKRAKQLADQ 158


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 159 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 55
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 112 PPSWRQYVPRGACVPP 159
           P SW QY P+G C+ P
Sbjct: 221 PNSWHQYQPKGTCIQP 236


>Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical
           protein M01B2.10 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 316 SSWQFCTSGAIFLKPFV--FVPIVPSVAYAHWLYLFSYKATVTTF 444
           +S+++C    I L PF   F+ +VP+     WLY  +    V  F
Sbjct: 309 TSYKYCNEKLIKLDPFSNPFIKLVPTAIPGQWLYFNNRTVWVELF 353


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 138 RNVLPPRRRNCCRPSLEKTKPRLP 67
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 309 LSIFLAVLYFRSNFLK 356
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


>U41531-4|AAR85902.1|  578|Caenorhabditis elegans Guanylyl cyclase
           protein 31, isoformc protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 158 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 286
           LH++   +  +++ L    + +  +D+  EH L LEH+ +RLH
Sbjct: 17  LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 57


>U41531-3|AAR85901.1|  702|Caenorhabditis elegans Guanylyl cyclase
           protein 31, isoformb protein.
          Length = 702

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 158 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 286
           LH++   +  +++ L    + +  +D+  EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181


>U41531-2|AAR85900.1|  594|Caenorhabditis elegans Guanylyl cyclase
           protein 31, isoforma protein.
          Length = 594

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 158 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 286
           LH++   +  +++ L    + +  +D+  EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181


>AY275184-1|AAP32292.1|  594|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-31c protein.
          Length = 594

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 158 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 286
           LH++   +  +++ L    + +  +D+  EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181


>AY275183-1|AAP32291.1|  578|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-31b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 158 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 286
           LH++   +  +++ L    + +  +D+  EH L LEH+ +RLH
Sbjct: 17  LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 57


>AY275182-1|AAP32290.1|  702|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-31a protein.
          Length = 702

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 158 LHFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 286
           LH++   +  +++ L    + +  +D+  EH L LEH+ +RLH
Sbjct: 141 LHYVQGQIRNISQELFQTEVVIELLDI--EHDLNLEHVIMRLH 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,064,699
Number of Sequences: 27780
Number of extensions: 173398
Number of successful extensions: 467
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)