Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306E12f
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...    99   8e-22
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...    98   2e-21
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...    97   4e-21
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   2e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   2.1  
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    28   2.8  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    28   3.7  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    27   5.0  

>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =   99 bits (238), Expect = 8e-22
 Identities = 48/79 (60%), Positives = 53/79 (67%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KR+GT  AR+P K LW              R  KKIDRH+YH +YMK KGNVFKNKRVLM
Sbjct: 80  KRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLM 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           E IH+ KAEKAR K LSDQ
Sbjct: 140 ESIHKSKAEKAREKTLSDQ 158


>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 47/79 (59%), Positives = 54/79 (68%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KR+GT  AR+P K LW              R +KKIDRH+YH +YMK KGNVFKNKRVLM
Sbjct: 80  KRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLM 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           E IH+ KAEKAR K L+DQ
Sbjct: 140 ESIHKMKAEKAREKTLADQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score = 97.5 bits (232), Expect = 4e-21
 Identities = 46/79 (58%), Positives = 53/79 (67%)
 Frame = -3

Query: 421 KRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 242
           KR+GT  AR+P K LW              R  KKID+H+YH +YM+ KGNVFKNKRVLM
Sbjct: 80  KRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLM 139

Query: 241 EYIHRKKAEKARTKMLSDQ 185
           E IH+ KAEKAR K LSDQ
Sbjct: 140 ESIHKSKAEKAREKTLSDQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = -3

Query: 322 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 212
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 186  WSLSIFVLAFSAFFLWMYSMSTRL 257
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 379 VPSVAYAHWLYLFSYKATVTTFLRAL 456
           VP + YA WLY+ SY + +  +L+ L
Sbjct: 209 VPLLPYARWLYISSYVSRILYWLQLL 234


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 167  IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 283
            IA  L    KHL+P L+SL+P  V H EH L    +  RL
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 325 AKKIDRHLYHSLYMKAKGNVFKNKRVL 245
           A K+++ +Y   Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,988
Number of Sequences: 28952
Number of extensions: 161790
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)