Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306E11f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 170 4e-43
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 169 7e-43
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 167 5e-42
At2g35200.1 68415.m04317 expressed protein 30 0.82
At3g43870.1 68416.m04696 hypothetical protein 29 1.4
At3g57460.1 68416.m06397 expressed protein weak similarity to SP... 29 1.9
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 28 3.3
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 27 5.8
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 170 bits (414), Expect = 4e-43
Identities = 71/149 (47%), Positives = 105/149 (70%)
Frame = +3
Query: 21 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 200
+L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G+++
Sbjct: 5 RLHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAIN 64
Query: 201 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 380
NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 381 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 467
IIK + A+ C+R KQFHNS I+FPL
Sbjct: 125 IIKTATVPASLCKRESTKQFHNSKIKFPL 153
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 169 bits (412), Expect = 7e-43
Identities = 72/149 (48%), Positives = 103/149 (69%)
Frame = +3
Query: 21 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 200
+ +Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 201 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 380
NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 381 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 467
IIK + A C+R KQFHNS I+FPL
Sbjct: 125 IIKTATVPAKLCKRESTKQFHNSKIKFPL 153
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 167 bits (405), Expect = 5e-42
Identities = 70/149 (46%), Positives = 101/149 (67%)
Frame = +3
Query: 21 QLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 200
+ +Y+V+GR LP+EN+ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAIN 64
Query: 201 XXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 380
N+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQ
Sbjct: 65 EIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQ 124
Query: 381 IIKVEVIKAAACRRPQVKQFHNSTIRFPL 467
IIK + A C+R KQFHNS I+FPL
Sbjct: 125 IIKTATVPAKLCKREITKQFHNSKIKFPL 153
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 30.3 bits (65), Expect = 0.82
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 99 IFSPDPIVAKSRFWYFLRQLKKFKKT 176
+FSP P+ +K WYF +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185
>At3g43870.1 68416.m04696 hypothetical protein
Length = 187
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 157 SCLRKYQKRDLATIGSGEKILILYKGGLGSFSEGSLRPITSYSLNCPLAFI 5
SC ++++ D+ TIG + KG + G +R T Y LN + F+
Sbjct: 4 SCFKEFRVADILTIGFKLHPYLTLKGLIEMKRRGLIRDTTGYILNGGITFL 54
>At3g57460.1 68416.m06397 expressed protein weak similarity to
SP|O43847 Nardilysin precursor (EC 3.4.24.61)
(N-arginine dibasic convertase) {Homo sapiens}
Length = 356
Score = 29.1 bits (62), Expect = 1.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 429 VKQFHNSTIRFPLPKRVHHYK 491
+KQ HN T+ +P+ +HHY+
Sbjct: 44 IKQGHNLTVSWPVTPSIHHYE 64
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +3
Query: 12 AKGQLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 179
AKG ++ + +LPS +EP PP R F D V+ + W R KK TT
Sbjct: 136 AKGVKTDWMMHEFRLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 169 LNFLSCLR-KYQKRDLATIGSGEKILILYKGGLGSFSE 59
LNF++ L+ ++Q+ D +GS I+ +YK G S E
Sbjct: 374 LNFMNKLKTRFQRIDTHVVGSFHSIMTMYKEGKKSRKE 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,472,206
Number of Sequences: 28952
Number of extensions: 229367
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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